View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_high_23 (Length: 332)
Name: NF3234_high_23
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 52860652 - 52860331
Alignment:
| Q |
1 |
ttgtgaagataaacagcacgtaggaagagacaatgagaaagagaagaaggtattgatgagttaaggttgttggaatggagactaagtttacgaagctgtg |
100 |
Q |
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| T |
52860652 |
ttgtgaagataaacagcacgtaggaagagacaatgagaaagagaagaaggtattgatgagttaaggttgttggaatggagactaagtttacgaagctgtg |
52860553 |
T |
|
| Q |
101 |
agagattagagagtgatgaagatattgaaccagtgagttgaagacgaggtaaacgtatagtgtgaactctgttattgttgttgtaacagagaatgccatg |
200 |
Q |
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| T |
52860552 |
agagattagagagtgatgaagatattgaaccagtgagttgaagacgaggtaaacgtatagtgtgaactctgttattgttgttgtaacagagaatgccatg |
52860453 |
T |
|
| Q |
201 |
ccaatcacatggtgctgaaggtgttgatggatcccaagttgttaaggcattgagtgggtcaagaaggtttagtttgaagattgttaaggcttggatttcg |
300 |
Q |
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| T |
52860452 |
ccaatcacatggtgctgaaggtgttgatggatcccaagttgttaaggcattgagtgggtcaagaaggtttagtttgaagattgttaaggcttggatttcg |
52860353 |
T |
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| Q |
301 |
gaatgagatgagttgatctgtg |
322 |
Q |
| |
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||||||||||||||||| |||| |
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| T |
52860352 |
gaatgagatgagttgatttgtg |
52860331 |
T |
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