View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3234_high_28 (Length: 303)

Name: NF3234_high_28
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3234_high_28
NF3234_high_28
[»] chr1 (18 HSPs)
chr1 (11-303)||(2218006-2218298)
chr1 (269-303)||(22515887-22515921)
chr1 (269-303)||(22881616-22881650)
chr1 (270-303)||(41877470-41877503)
chr1 (272-303)||(46348383-46348414)
chr1 (269-303)||(15449232-15449266)
chr1 (269-303)||(18337354-18337388)
chr1 (269-303)||(24577186-24577220)
chr1 (269-303)||(25272507-25272541)
chr1 (269-303)||(47989522-47989556)
chr1 (269-303)||(51410050-51410084)
chr1 (269-302)||(1815282-1815315)
chr1 (270-303)||(6612171-6612204)
chr1 (270-303)||(19058856-19058889)
chr1 (269-302)||(40258934-40258967)
chr1 (162-230)||(2225586-2225654)
chr1 (271-303)||(24334705-24334737)
chr1 (270-298)||(48450592-48450620)
[»] chr8 (14 HSPs)
chr8 (269-303)||(2572056-2572090)
chr8 (269-303)||(8342997-8343031)
chr8 (269-303)||(20873094-20873128)
chr8 (269-303)||(4948677-4948711)
chr8 (269-303)||(8343341-8343375)
chr8 (269-303)||(15816129-15816163)
chr8 (269-303)||(24613545-24613579)
chr8 (269-303)||(25566866-25566900)
chr8 (269-302)||(4298887-4298920)
chr8 (228-269)||(4298955-4298996)
chr8 (270-303)||(16867205-16867238)
chr8 (269-302)||(22197743-22197776)
chr8 (270-303)||(24669459-24669492)
chr8 (269-301)||(40332216-40332248)
[»] chr7 (9 HSPs)
chr7 (269-303)||(2334275-2334309)
chr7 (269-303)||(9408334-9408368)
chr7 (269-303)||(15680834-15680868)
chr7 (269-303)||(18039024-18039058)
chr7 (269-303)||(21560528-21560562)
chr7 (269-303)||(24339667-24339701)
chr7 (269-302)||(11061077-11061110)
chr7 (270-303)||(21880178-21880211)
chr7 (270-303)||(27945067-27945100)
[»] chr5 (9 HSPs)
chr5 (269-303)||(33178050-33178084)
chr5 (269-303)||(6247647-6247681)
chr5 (269-303)||(15884013-15884047)
chr5 (269-303)||(19579726-19579760)
chr5 (269-303)||(21191056-21191090)
chr5 (269-303)||(43564906-43564940)
chr5 (269-298)||(14674294-14674323)
chr5 (269-302)||(21351906-21351939)
chr5 (270-303)||(21542056-21542089)
[»] chr3 (8 HSPs)
chr3 (269-303)||(1509564-1509598)
chr3 (269-303)||(55401100-55401134)
chr3 (269-303)||(8587021-8587055)
chr3 (269-303)||(25775534-25775568)
chr3 (269-303)||(27505271-27505305)
chr3 (269-303)||(28918026-28918060)
chr3 (269-302)||(10268487-10268520)
chr3 (269-301)||(55212988-55213020)
[»] scaffold0011 (1 HSPs)
scaffold0011 (269-302)||(17750-17783)
[»] chr6 (14 HSPs)
chr6 (270-303)||(21395308-21395341)
chr6 (268-303)||(32978899-32978934)
chr6 (269-303)||(403864-403898)
chr6 (269-303)||(3209407-3209441)
chr6 (269-303)||(9911528-9911562)
chr6 (269-303)||(10770674-10770708)
chr6 (269-303)||(16766722-16766756)
chr6 (269-303)||(17841589-17841623)
chr6 (269-303)||(28152123-28152157)
chr6 (269-303)||(34595159-34595193)
chr6 (270-303)||(6898281-6898314)
chr6 (270-303)||(7977830-7977863)
chr6 (270-303)||(28715321-28715354)
chr6 (269-301)||(9522916-9522948)
[»] chr4 (14 HSPs)
chr4 (269-301)||(6485613-6485645)
chr4 (272-303)||(16303266-16303297)
chr4 (269-303)||(4157174-4157208)
chr4 (269-303)||(4157461-4157495)
chr4 (269-303)||(6879465-6879499)
chr4 (269-303)||(12797338-12797372)
chr4 (269-303)||(42640554-42640588)
chr4 (270-303)||(2361975-2362008)
chr4 (270-303)||(21945529-21945562)
chr4 (270-303)||(30298973-30299006)
chr4 (270-303)||(30327841-30327874)
chr4 (269-302)||(35157986-35158019)
chr4 (271-303)||(16073421-16073453)
chr4 (269-301)||(29205469-29205501)
[»] chr2 (9 HSPs)
chr2 (272-303)||(20539674-20539705)
chr2 (269-303)||(2438719-2438753)
chr2 (272-302)||(14996224-14996254)
chr2 (269-303)||(18421988-18422022)
chr2 (269-303)||(19536397-19536431)
chr2 (270-303)||(30335443-30335476)
chr2 (270-302)||(11223864-11223896)
chr2 (270-302)||(18841014-18841046)
chr2 (271-303)||(21624294-21624326)
[»] scaffold0236 (1 HSPs)
scaffold0236 (269-303)||(25768-25802)
[»] scaffold0025 (1 HSPs)
scaffold0025 (269-303)||(23795-23829)
[»] scaffold0083 (1 HSPs)
scaffold0083 (270-303)||(45530-45563)
[»] scaffold0004 (1 HSPs)
scaffold0004 (269-302)||(123653-123686)
[»] scaffold0171 (1 HSPs)
scaffold0171 (230-266)||(23371-23407)
[»] scaffold0053 (1 HSPs)
scaffold0053 (275-303)||(8829-8857)


Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 303
Target Start/End: Original strand, 2218006 - 2218298
Alignment:
Q  11 cacagagaacatatgcaaaataagggatttgtctcctcaaaagtgagcaattcattttacaatttaaggatgaacaaatcaaccattgatattataaatc 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2218006 cacagagaacatatgcaaaataagggatttgtctcctcaaaagtgagcaattcattttacaacttaaggatgaacaaatcaaccattgatattataaatc 2218105  T
Q  111 ataaattagttaattacttttaaactgagaattcaatgtaaaagaagaaatcaaatcatggcctagtctccgttaaaagtccaaagatataaaatgaaca 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2218106 ataaattagttaattacttttaaactgagaattcaatgtaaaagaagaaatcaaatcatggcctagtctccgttaaaagtccaaagatataaaatgaaca 2218205  T
Q  211 tccataaataatgtagcacctatgaagcacggatacgaacacgaacacgacacagatacacataatttagtgtaattacaagtgtcggtgtcg 303  Q
     |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2218206 accataaataatgtagcacctatgaagcacggatacggacacgaacacgacacagatacacataatttagtgtaattacaagtgtcggtgtcg 2218298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 22515921 - 22515887
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||||||||||||||||||||||||    
T  22515921 cacataatttagtgtaattacaagtgtcggtgtcg 22515887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 22881650 - 22881616
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||||||||||||||||||||||||    
T  22881650 cacataatttagtgtaattacaagtgtcggtgtcg 22881616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 41877503 - 41877470
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||||||||||||||||||||||||||||    
T  41877503 acataatttagtgtaattacaagtgtcggtgtcg 41877470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 272 - 303
Target Start/End: Complemental strand, 46348414 - 46348383
Alignment:
Q  272 ataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||||||||||||||||||||||||||    
T  46348414 ataatttagtgtaattacaagtgtcggtgtcg 46348383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 15449266 - 15449232
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||||||||||||||||| ||||||    
T  15449266 cacataatttagtgtaattacaagtgtctgtgtcg 15449232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 18337354 - 18337388
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  18337354 cacataattcagtgtaattacaagtgtcggtgtcg 18337388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 24577220 - 24577186
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  24577220 cacataattcagtgtaattacaagtgtcggtgtcg 24577186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 25272507 - 25272541
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||||||||| ||||||||||||||    
T  25272507 cacataatttagtgtaattataagtgtcggtgtcg 25272541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 47989522 - 47989556
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  47989522 cacataattcagtgtaattacaagtgtcggtgtcg 47989556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 51410050 - 51410084
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  51410050 cacataattcagtgtaattacaagtgtcggtgtcg 51410084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 1815282 - 1815315
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtc 302  Q
    ||||||||| ||||||||||||||||||||||||    
T  1815282 cacataattcagtgtaattacaagtgtcggtgtc 1815315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 6612204 - 6612171
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||| |||||||||||||||||||||||||    
T  6612204 acataattcagtgtaattacaagtgtcggtgtcg 6612171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 19058889 - 19058856
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||| |||||||||||||||||||||||||    
T  19058889 acataattcagtgtaattacaagtgtcggtgtcg 19058856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 40258967 - 40258934
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtc 302  Q
    ||||||||| ||||||||||||||||||||||||    
T  40258967 cacataattcagtgtaattacaagtgtcggtgtc 40258934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 230
Target Start/End: Original strand, 2225586 - 2225654
Alignment:
Q  162 caaatcatggcctagtctccgttaaaagtccaaagatataaaatgaacatccataaataatgtagcacc 230  Q
    ||||||| |||||||||||  ||||||||||||| | |||| || |||| | ||||| |||||||||||    
T  2225586 caaatcaaggcctagtctctattaaaagtccaaataaataacataaacagctataaacaatgtagcacc 2225654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 303
Target Start/End: Complemental strand, 24334737 - 24334705
Alignment:
Q  271 cataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||| |||||||||||||||||||||||||    
T  24334737 cataattcagtgtaattacaagtgtcggtgtcg 24334705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 298
Target Start/End: Complemental strand, 48450620 - 48450592
Alignment:
Q  270 acataatttagtgtaattacaagtgtcgg 298  Q
    |||||||||||||||||||||||||||||    
T  48450620 acataatttagtgtaattacaagtgtcgg 48450592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 2572090 - 2572056
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||||||||||||||||||||||||    
T  2572090 cacataatttagtgtaattacaagtgtcggtgtcg 2572056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 8342997 - 8343031
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||||||||||||||||||||||||    
T  8342997 cacataatttagtgtaattacaagtgtcggtgtcg 8343031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 20873094 - 20873128
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||||||||||||||||||||||||    
T  20873094 cacataatttagtgtaattacaagtgtcggtgtcg 20873128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 4948677 - 4948711
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  4948677 cacataattcagtgtaattacaagtgtcggtgtcg 4948711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 8343341 - 8343375
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||||||||||||||||| ||||||    
T  8343341 cacataatttagtgtaattacaagtgtcagtgtcg 8343375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 15816163 - 15816129
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||||||||| ||||||||||||||    
T  15816163 cacataatttagtgtaattataagtgtcggtgtcg 15816129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 24613545 - 24613579
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  24613545 cacataattaagtgtaattacaagtgtcggtgtcg 24613579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 25566866 - 25566900
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  25566866 cacataattcagtgtaattacaagtgtcggtgtcg 25566900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 4298920 - 4298887
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtc 302  Q
    ||||||||||| ||||||||||||||||||||||    
T  4298920 cacataatttaatgtaattacaagtgtcggtgtc 4298887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 4298996 - 4298955
Alignment:
Q  228 acctatgaagcacggatacgaacacgaacacgacacagatac 269  Q
    |||||||||||||||||| | ||||| |||||||||||||||    
T  4298996 acctatgaagcacggatatggacacggacacgacacagatac 4298955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 16867238 - 16867205
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||||||||||||| ||||||||||||||    
T  16867238 acataatttagtgtaattataagtgtcggtgtcg 16867205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 22197776 - 22197743
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtc 302  Q
    |||||||||||||||||||||||||||| |||||    
T  22197776 cacataatttagtgtaattacaagtgtcagtgtc 22197743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Original strand, 24669459 - 24669492
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||| |||||||||||||||||||||||||    
T  24669459 acataattcagtgtaattacaagtgtcggtgtcg 24669492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 40332216 - 40332248
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  40332216 cacataattcagtgtaattacaagtgtcggtgt 40332248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 2334275 - 2334309
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||||||||||||||||||||||||    
T  2334275 cacataatttagtgtaattacaagtgtcggtgtcg 2334309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 9408368 - 9408334
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||||||||||||||||||||||||    
T  9408368 cacataatttagtgtaattacaagtgtcggtgtcg 9408334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 15680834 - 15680868
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||||||||| ||||||||||||||    
T  15680834 cacataatttagtgtaattataagtgtcggtgtcg 15680868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 18039024 - 18039058
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  18039024 cacataattcagtgtaattacaagtgtcggtgtcg 18039058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 21560528 - 21560562
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  21560528 cacataattcagtgtaattacaagtgtcggtgtcg 21560562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 24339667 - 24339701
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  24339667 cacataattcagtgtaattacaagtgtcggtgtcg 24339701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 11061110 - 11061077
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtc 302  Q
    ||||||||||||| ||||||||||||||||||||    
T  11061110 cacataatttagtataattacaagtgtcggtgtc 11061077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Original strand, 21880178 - 21880211
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||| |||||||||||||||||||||||||    
T  21880178 acataattcagtgtaattacaagtgtcggtgtcg 21880211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Original strand, 27945067 - 27945100
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||| |||||||||||||||||||||||||    
T  27945067 acataattcagtgtaattacaagtgtcggtgtcg 27945100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 33178050 - 33178084
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||||||||||||||||||||||||    
T  33178050 cacataatttagtgtaattacaagtgtcggtgtcg 33178084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 6247647 - 6247681
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  6247647 cacataattcagtgtaattacaagtgtcggtgtcg 6247681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 15884013 - 15884047
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  15884013 cacataattcagtgtaattacaagtgtcggtgtcg 15884047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 19579726 - 19579760
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||| ||||||||||||||||||||    
T  19579726 cacataatttagtgcaattacaagtgtcggtgtcg 19579760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 21191090 - 21191056
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  21191090 cacataattcagtgtaattacaagtgtcggtgtcg 21191056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 43564906 - 43564940
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||||||||| ||||||||||||||    
T  43564906 cacataatttagtgtaattataagtgtcggtgtcg 43564940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 298
Target Start/End: Original strand, 14674294 - 14674323
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcgg 298  Q
    ||||||||||||||||||||||||||||||    
T  14674294 cacataatttagtgtaattacaagtgtcgg 14674323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 21351939 - 21351906
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtc 302  Q
    ||||||||| ||||||||||||||||||||||||    
T  21351939 cacataattcagtgtaattacaagtgtcggtgtc 21351906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Original strand, 21542056 - 21542089
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||| |||||||||||||||||||||||||    
T  21542056 acataattcagtgtaattacaagtgtcggtgtcg 21542089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 1509564 - 1509598
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||||||||||||||||||||||||    
T  1509564 cacataatttagtgtaattacaagtgtcggtgtcg 1509598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 55401100 - 55401134
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||||||||||||||||||||||||    
T  55401100 cacataatttagtgtaattacaagtgtcggtgtcg 55401134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 8587055 - 8587021
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  8587055 cacataattaagtgtaattacaagtgtcggtgtcg 8587021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 25775534 - 25775568
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  25775534 cacataattcagtgtaattacaagtgtcggtgtcg 25775568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 27505271 - 27505305
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  27505271 cacataattaagtgtaattacaagtgtcggtgtcg 27505305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 28918026 - 28918060
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  28918026 cacataattcagtgtaattacaagtgtcggtgtcg 28918060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 10268520 - 10268487
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtc 302  Q
    |||||||||||||||||||||||||||| |||||    
T  10268520 cacataatttagtgtaattacaagtgtcagtgtc 10268487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 55212988 - 55213020
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    |||||||||||||| ||||||||||||||||||    
T  55212988 cacataatttagtgcaattacaagtgtcggtgt 55213020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 17783 - 17750
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtc 302  Q
    ||||||||||||||||||||||||||||||||||    
T  17783 cacataatttagtgtaattacaagtgtcggtgtc 17750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 21395341 - 21395308
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||||||||||||||||||||||||||||    
T  21395341 acataatttagtgtaattacaagtgtcggtgtcg 21395308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 303
Target Start/End: Complemental strand, 32978934 - 32978899
Alignment:
Q  268 acacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||| |||||||||||||||||||||||||    
T  32978934 acacataattaagtgtaattacaagtgtcggtgtcg 32978899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 403898 - 403864
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||||||||||| |||||||||||||||||    
T  403898 cacataatttagtgtaactacaagtgtcggtgtcg 403864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 3209407 - 3209441
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||||||||| |||||||||||||||||||    
T  3209407 cacataatttagtgttattacaagtgtcggtgtcg 3209441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 9911562 - 9911528
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  9911562 cacataattcagtgtaattacaagtgtcggtgtcg 9911528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 10770708 - 10770674
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  10770708 cacataattcagtgtaattacaagtgtcggtgtcg 10770674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 16766722 - 16766756
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  16766722 cacataattcagtgtaattacaagtgtcggtgtcg 16766756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 17841623 - 17841589
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||||||||||||||| ||||||||    
T  17841623 cacataatttagtgtaattacaagtgacggtgtcg 17841589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 28152123 - 28152157
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  28152123 cacataattcagtgtaattacaagtgtcggtgtcg 28152157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 34595159 - 34595193
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  34595159 cacataattcagtgtaattacaagtgtcggtgtcg 34595193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 6898314 - 6898281
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||| |||||||||||||||||||||||||    
T  6898314 acataattaagtgtaattacaagtgtcggtgtcg 6898281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 7977863 - 7977830
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||| |||||||||||||||||||||||||    
T  7977863 acataattcagtgtaattacaagtgtcggtgtcg 7977830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Original strand, 28715321 - 28715354
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||| |||||||||||||||||||||||||    
T  28715321 acataattcagtgtaattacaagtgtcggtgtcg 28715354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 9522916 - 9522948
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  9522916 cacataattcagtgtaattacaagtgtcggtgt 9522948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 301
Target Start/End: Complemental strand, 6485645 - 6485613
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    |||||||||||||||||||||||||||||||||    
T  6485645 cacataatttagtgtaattacaagtgtcggtgt 6485613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 272 - 303
Target Start/End: Complemental strand, 16303297 - 16303266
Alignment:
Q  272 ataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||||||||||||||||||||||||||    
T  16303297 ataatttagtgtaattacaagtgtcggtgtcg 16303266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 4157174 - 4157208
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||| ||||||||||||||||||||    
T  4157174 cacataatttagtgcaattacaagtgtcggtgtcg 4157208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 4157461 - 4157495
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||| ||||||||||||||||||||    
T  4157461 cacataatttagtgcaattacaagtgtcggtgtcg 4157495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 6879499 - 6879465
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  6879499 cacataattaagtgtaattacaagtgtcggtgtcg 6879465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 12797372 - 12797338
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  12797372 cacataattcagtgtaattacaagtgtcggtgtcg 12797338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 42640554 - 42640588
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  42640554 cacataattcagtgtaattacaagtgtcggtgtcg 42640588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 2362008 - 2361975
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||||||||||||| ||||||||||||||    
T  2362008 acataatttagtgtaattaaaagtgtcggtgtcg 2361975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Original strand, 21945529 - 21945562
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||| |||||||||||||||||||||||||    
T  21945529 acataattcagtgtaattacaagtgtcggtgtcg 21945562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Original strand, 30298973 - 30299006
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||| |||||||||||||||||||||||||    
T  30298973 acataattcagtgtaattacaagtgtcggtgtcg 30299006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Original strand, 30327841 - 30327874
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||| |||||||||||||||||||||||||    
T  30327841 acataattcagtgtaattacaagtgtcggtgtcg 30327874  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Complemental strand, 35158019 - 35157986
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtc 302  Q
    |||||||||||||||||||| |||||||||||||    
T  35158019 cacataatttagtgtaattataagtgtcggtgtc 35157986  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 303
Target Start/End: Original strand, 16073421 - 16073453
Alignment:
Q  271 cataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||| |||||||||||||||||||||||||    
T  16073421 cataattcagtgtaattacaagtgtcggtgtcg 16073453  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 269 - 301
Target Start/End: Original strand, 29205469 - 29205501
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgt 301  Q
    ||||||||| |||||||||||||||||||||||    
T  29205469 cacataattcagtgtaattacaagtgtcggtgt 29205501  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 272 - 303
Target Start/End: Complemental strand, 20539705 - 20539674
Alignment:
Q  272 ataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||||||||||||||||||||||||||    
T  20539705 ataatttagtgtaattacaagtgtcggtgtcg 20539674  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 2438753 - 2438719
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  2438753 cacataattcagtgtaattacaagtgtcggtgtcg 2438719  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 272 - 302
Target Start/End: Complemental strand, 14996254 - 14996224
Alignment:
Q  272 ataatttagtgtaattacaagtgtcggtgtc 302  Q
    |||||||||||||||||||||||||||||||    
T  14996254 ataatttagtgtaattacaagtgtcggtgtc 14996224  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 18421988 - 18422022
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  18421988 cacataattcagtgtaattacaagtgtcggtgtcg 18422022  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 19536431 - 19536397
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  19536431 cacataattcagtgtaattacaagtgtcggtgtcg 19536397  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Original strand, 30335443 - 30335476
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||||||||||| |||||||||||    
T  30335443 acataatttagtgtaattacaaatgtcggtgtcg 30335476  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 11223896 - 11223864
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgtc 302  Q
    |||||||| ||||||||||||||||||||||||    
T  11223896 acataattcagtgtaattacaagtgtcggtgtc 11223864  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 302
Target Start/End: Complemental strand, 18841046 - 18841014
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgtc 302  Q
    |||||||| ||||||||||||||||||||||||    
T  18841046 acataattaagtgtaattacaagtgtcggtgtc 18841014  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 271 - 303
Target Start/End: Original strand, 21624294 - 21624326
Alignment:
Q  271 cataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||| |||||||||||||||||||||||||    
T  21624294 cataattcagtgtaattacaagtgtcggtgtcg 21624326  T

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Target: scaffold0236 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 25802 - 25768
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||||||||| ||||||||||||||    
T  25802 cacataatttagtgtaattataagtgtcggtgtcg 25768  T

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Target: scaffold0025 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Original strand, 23795 - 23829
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtcg 303  Q
    ||||||||| |||||||||||||||||||||||||    
T  23795 cacataattcagtgtaattacaagtgtcggtgtcg 23829  T

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Target: scaffold0083 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 270 - 303
Target Start/End: Complemental strand, 45563 - 45530
Alignment:
Q  270 acataatttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||| |||||||||||||||||||||||||    
T  45563 acataattcagtgtaattacaagtgtcggtgtcg 45530  T

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Target: scaffold0004 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 269 - 302
Target Start/End: Original strand, 123653 - 123686
Alignment:
Q  269 cacataatttagtgtaattacaagtgtcggtgtc 302  Q
    ||||||||| ||||||||||||||||||||||||    
T  123653 cacataattcagtgtaattacaagtgtcggtgtc 123686  T

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Target: scaffold0171 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 266
Target Start/End: Original strand, 23371 - 23407
Alignment:
Q  230 ctatgaagcacggatacgaacacgaacacgacacaga 266  Q
    |||||||||||||||||| ||||| ||||||||||||    
T  23371 ctatgaagcacggatacggacacggacacgacacaga 23407  T

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Target: scaffold0053 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 303
Target Start/End: Original strand, 8829 - 8857
Alignment:
Q  275 atttagtgtaattacaagtgtcggtgtcg 303  Q
    |||||||||||||||||||||||||||||    
T  8829 atttagtgtaattacaagtgtcggtgtcg 8857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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