View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_high_29 (Length: 295)
Name: NF3234_high_29
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_high_29 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 16 - 278
Target Start/End: Complemental strand, 26375095 - 26374833
Alignment:
| Q |
16 |
atggtgtcaatcttgatgaagtaaaggtaattgattatcttcagaacatatttatgacttaactgtagtattaccgtagtttttagtaggttcttagaat |
115 |
Q |
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| T |
26375095 |
atggtgtcaatcttgatgaagtaaaggtaattgattatcttcagaacatatttatgacttaactgtagtattaccgtagtttttaataggttcttagaat |
26374996 |
T |
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| Q |
116 |
tttttaggccaatggacgttacttcaagaagatattaaacaatgatttcatattgggcaaacttaattttgataactaatttggaaacatggtgtactat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26374995 |
tttttaggccaatggacgttacttcaagaagatattaaacaatgatttcatattgggcaaacttaattttgataactaatttggaaacatggtgtactat |
26374896 |
T |
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| Q |
216 |
attcgtatacattttgatctcgatgaggttggtctgctagaagcatgcagaccagcgtgctag |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26374895 |
attcgtatacattttgatctcgatgaggttggtctgctagaagcatgcagaccagcgtgctag |
26374833 |
T |
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