View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_high_30 (Length: 291)
Name: NF3234_high_30
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_high_30 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 15049901 - 15050157
Alignment:
| Q |
20 |
atcaccatcaaattcatcaaatattgtctccaagaaatcaattgcttcatcagtcaattcaacactctggagacattaaatccaatgagagtagcataag |
119 |
Q |
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| T |
15049901 |
atcaccatcaaattcatcaaatattgtctccaagaaatcaattgcttcatcagtcaattcaacactctggagacattaaatccaatgagagtagcataag |
15050000 |
T |
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| Q |
120 |
ttccatgttgtcgacaaattgaatacaaacatgtataacatataaagaatataatacatgatgccacaatttatctcaaaagaaagacctgatcaggtgc |
219 |
Q |
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| T |
15050001 |
ttccatgttgtcgacaaattgaatacaaacatgtataacatataaagaatataatacatgatgccacaatttatctcaaaagaaagacctgatcaggtgc |
15050100 |
T |
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| Q |
220 |
gtttcaaaggtggaaataaatcatcagaaagcttgatatcataattatatccaaact |
276 |
Q |
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| T |
15050101 |
gtttcaaaggtggaaataaatcatcagaaagcttgatatcataattatatccaaact |
15050157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 24 - 276
Target Start/End: Original strand, 15017132 - 15017388
Alignment:
| Q |
24 |
ccatcaaattcatcaaatattgtctccaagaaatcaattgcttcatcagtcaattcaacactctggagacattaaatccaatgagagtagcataagttcc |
123 |
Q |
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| T |
15017132 |
ccatcaaattcatcaaagattgtctccaagaaatcaactgcttcatttgtcaattcaacactctgcatacattaaa-ccaatgagaatagaataagttcc |
15017230 |
T |
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| Q |
124 |
atgt--tgtcgacaaattgaa-tacaaacatgtataacatataaagaatataatacatgatgccacaatttatctcaaaagaaagacctgatcaggtgc- |
219 |
Q |
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| T |
15017231 |
atatattgtcaacaaattgaaatacaaacaggtataacatatagagaacataatacaagatgccacaatttatctcaaaagaaacacctgatcaggtgca |
15017330 |
T |
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| Q |
220 |
-gtttcaaaggtggaaataaatcatcagaaagcttgatatcataattatatccaaact |
276 |
Q |
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| T |
15017331 |
agcttcaaaggcggaaataaatcagcagcaagcttgacatcataattatatccaaact |
15017388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 27 - 275
Target Start/End: Original strand, 17882436 - 17882693
Alignment:
| Q |
27 |
tcaaattcatcaaatattgtctccaagaaatcaattgcttcatcagtcaattcaacactctggagacattaaatccaatgagagtagcataag------- |
119 |
Q |
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|||| ||||||||| | ||||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||| | || ||| ||||| |
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| T |
17882436 |
tcaagttcatcaaaaactgtcttcaagaaatcaattgcttcatttgttaattcaacactctgcagacattaaatccaacgtgaatagaataagatgcaag |
17882535 |
T |
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| Q |
120 |
ttccatgttgtcgacaaattgaatacaaacatgtataacatataaagaatataatacatgatgccacaatttatctcaaaagaaagacctgatcaggtg- |
218 |
Q |
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|||||||||||| || ||||||||||||||| |||||||||| ||||| |||| ||||| | ||||||| ||||||||||||| ||||||||||||| |
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| T |
17882536 |
ttccatgttgtcaactaattgaatacaaacaggtataacatactaagaacataaatcatgaggtcacaattcatctcaaaagaaacacctgatcaggtgc |
17882635 |
T |
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| Q |
219 |
-cgtttcaaaggtggaaataaatcatcagaaagcttgatatcataattatatccaaac |
275 |
Q |
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| T |
17882636 |
acgtttcaaaggtggaattaaatcatcagcaagcttgatatcatcattatatccaaac |
17882693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 20 - 276
Target Start/End: Original strand, 14775058 - 14775321
Alignment:
| Q |
20 |
atcaccatcaaattcatcaaatattgtctccaagaaatcaattgcttcatcagtcaattcaacactctggagacattaaatccaatgagagtagcataag |
119 |
Q |
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||||||||||| | ||||||| ||| ||||||||||| ||||||||||| || || ||||||||||| ||||||||||||| |||||| ||| ||||| |
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| T |
14775058 |
atcaccatcaagtccatcaaagattttctccaagaaacaaattgcttcatttgttaactcaacactctgcagacattaaatccgatgagaatagaataag |
14775157 |
T |
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| Q |
120 |
-----ttccatgttgtcgacaaattgaatacaaacatgtataacatataaagaatataataca-tgatgccacaatttatctcaaaagaaagacctgatc |
213 |
Q |
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|| | | | || |||||| ||||||||||||||||||||||||||||| |||| | | | | | ||||||| |||| |||||||| |||||||| |
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| T |
14775158 |
ataagtttcttatactcaacaaat-gaatacaaacatgtataacatataaagaacataaaaaaataaggtcacaattcatctgaaaagaaacacctgatc |
14775256 |
T |
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| Q |
214 |
aggtgc--gtttcaaaggtggaaataaatcatcagaaagcttgatatcataattatatccaaact |
276 |
Q |
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|||||| ||||||||||||||| |||| ||||| |||||||||||||| |||||||||||||| |
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| T |
14775257 |
aggtgcacgtttcaaaggtggaatcaaattatcagcaagcttgatatcatcattatatccaaact |
14775321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 36874676 - 36874545
Alignment:
| Q |
43 |
ttgtctccaagaaatcaattgcttcatcagtcaattcaacactctggagacattaaatccaatgagagtagcataa-------gttccatgttgtcgaca |
135 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||| | || |||||||||| |||| ||| |||| | || | |||||| | | |
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| T |
36874676 |
ttgtcttcaagaaatcaattgcttcatgtgtcaattcaacactctgcaaacgttaaatccaaagagaatagaataagatataggatctaagttgtcaaga |
36874577 |
T |
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| Q |
136 |
aattgaatacaaacatgtataacatataaaga |
167 |
Q |
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||||||| ||||||| |||||||||||||||| |
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| T |
36874576 |
aattgaacacaaacaggtataacatataaaga |
36874545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 276
Target Start/End: Complemental strand, 36874492 - 36874420
Alignment:
| Q |
206 |
acctgatcagg--tgcgtttcaaaggtggaaataaatcatcagaaagcttgatatcataattatatccaaact |
276 |
Q |
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||||||||||| |||| ||||||||||||| | |||||||| ||||||||| |||| ||||||||| |||| |
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| T |
36874492 |
acctgatcaggagtgcgcttcaaaggtggaactgcatcatcagcaagcttgatttcatcattatatccgaact |
36874420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 182 - 275
Target Start/End: Complemental strand, 53866753 - 53866658
Alignment:
| Q |
182 |
gccacaatttatctcaaaagaaagacctgatcaggtgc--gtttcaaaggtggaaataaatcatcagaaagcttgatatcataattatatccaaac |
275 |
Q |
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|||||| || || |||||||||| ||||||||||| || |||||||| |||| || || ||||| ||| |||||||||| ||||||||||||| |
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| T |
53866753 |
gccacatttcatatcaaaagaaacacctgatcaggagcacgtttcaaatccggaattagatgatcagcaagtttgatatcatcattatatccaaac |
53866658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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