View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_high_34 (Length: 272)
Name: NF3234_high_34
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_high_34 |
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Alignment Details
Target: chr2 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 11 - 124
Target Start/End: Original strand, 11845905 - 11846018
Alignment:
| Q |
11 |
cacagactcggaggttttgcatattattgaattaaaatagttcgtatgaatgattttgtaacgtgtattataaacaagagtttgcttagcctttgaatat |
110 |
Q |
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| T |
11845905 |
cacagactcggaggttatgcatgttattgaattaaaatagttcgtatgaatgattttgtaacgtgtattataaacaagagtttgcttagcctttgaatat |
11846004 |
T |
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| Q |
111 |
cagatagtgcaatg |
124 |
Q |
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| T |
11846005 |
cagatagtgcaatg |
11846018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 121 - 227
Target Start/End: Original strand, 11850794 - 11850902
Alignment:
| Q |
121 |
aatgaattacactgaattttgttacaagttaatttatgcttgtgcttattcttacacctatataaaaatg--ttgtatgtttcaagaatgtacttatgtt |
218 |
Q |
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| T |
11850794 |
aatgaattacactggattttcttacaagttaatttttacctgtgcttattcttacacctatataaaaatgttttatatgtttcaagaatgtacttatgtt |
11850893 |
T |
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| Q |
219 |
ggttaagaa |
227 |
Q |
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| T |
11850894 |
ggttaagaa |
11850902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 11850634 - 11850690
Alignment:
| Q |
11 |
cacagactcggaggttttgcatattattgaattaaaatagttcgtatgaatgatttt |
67 |
Q |
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| T |
11850634 |
cacagactcggaggttatgcatattattgaattaaaatagttggtttgtatgatttt |
11850690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 122
Target Start/End: Original strand, 11850713 - 11850771
Alignment:
| Q |
64 |
ttttgtaacgtgtattataaacaagagtttgcttagcctttgaatatcagatagtgcaa |
122 |
Q |
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| T |
11850713 |
ttttgtaacatgtattataaacaagagttttcttaggctttgaatatcatatagggcaa |
11850771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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