View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3234_high_35 (Length: 268)

Name: NF3234_high_35
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3234_high_35
NF3234_high_35
[»] chr8 (15 HSPs)
chr8 (11-252)||(780195-780457)
chr8 (11-215)||(774513-774738)
chr8 (26-215)||(6786499-6786708)
chr8 (140-212)||(22432274-22432346)
chr8 (140-212)||(29182558-29182630)
chr8 (140-212)||(27576827-27576905)
chr8 (157-212)||(1668169-1668224)
chr8 (157-212)||(16658884-16658939)
chr8 (157-212)||(38521226-38521281)
chr8 (212-252)||(774763-774803)
chr8 (157-212)||(22014899-22014954)
chr8 (159-212)||(11472357-11472414)
chr8 (212-252)||(22432373-22432413)
chr8 (212-252)||(27576760-27576800)
chr8 (212-252)||(29182657-29182697)
[»] chr6 (2 HSPs)
chr6 (11-215)||(32397294-32397517)
chr6 (212-252)||(32397229-32397269)
[»] chr1 (12 HSPs)
chr1 (26-215)||(26355067-26355277)
chr1 (140-212)||(29599234-29599306)
chr1 (140-212)||(324743-324815)
chr1 (142-212)||(26014531-26014601)
chr1 (140-212)||(48184303-48184369)
chr1 (167-212)||(6165049-6165094)
chr1 (167-212)||(10801568-10801613)
chr1 (167-212)||(16764537-16764582)
chr1 (212-252)||(26355002-26355042)
chr1 (160-212)||(17480990-17481042)
chr1 (212-252)||(29599333-29599373)
chr1 (212-252)||(48184236-48184276)
[»] chr4 (17 HSPs)
chr4 (100-212)||(47825972-47826084)
chr4 (140-212)||(21604490-21604562)
chr4 (140-212)||(46164349-46164421)
chr4 (79-173)||(54785073-54785175)
chr4 (142-212)||(8432965-8433035)
chr4 (157-212)||(21355931-21355986)
chr4 (157-212)||(13740252-13740307)
chr4 (157-212)||(23218220-23218275)
chr4 (157-212)||(45144036-45144091)
chr4 (157-212)||(45152805-45152860)
chr4 (161-212)||(54785192-54785243)
chr4 (166-212)||(33753972-33754018)
chr4 (159-212)||(3187588-3187641)
chr4 (212-252)||(21604423-21604463)
chr4 (159-212)||(38115505-38115562)
chr4 (212-252)||(46164448-46164488)
chr4 (212-252)||(47825905-47825945)
[»] chr7 (9 HSPs)
chr7 (100-212)||(35012917-35013029)
chr7 (140-212)||(9371871-9371943)
chr7 (140-212)||(21358005-21358077)
chr7 (142-212)||(6472229-6472299)
chr7 (157-212)||(44660373-44660428)
chr7 (212-252)||(6472326-6472366)
chr7 (212-252)||(9371804-9371844)
chr7 (212-252)||(21358104-21358144)
chr7 (212-252)||(35013056-35013096)
[»] chr3 (4 HSPs)
chr3 (140-212)||(9456478-9456550)
chr3 (157-212)||(21239499-21239554)
chr3 (157-212)||(52893495-52893550)
chr3 (159-212)||(2338818-2338869)
[»] chr2 (5 HSPs)
chr2 (142-212)||(25697552-25697622)
chr2 (157-212)||(3935372-3935427)
chr2 (166-212)||(32339606-32339652)
chr2 (166-212)||(38978382-38978428)
chr2 (212-252)||(25697649-25697689)
[»] chr5 (11 HSPs)
chr5 (140-212)||(32863708-32863780)
chr5 (142-212)||(10572767-10572837)
chr5 (157-229)||(18739403-18739473)
chr5 (157-212)||(3174228-3174283)
chr5 (157-212)||(19209112-19209167)
chr5 (157-212)||(23737946-23738001)
chr5 (11-51)||(7362907-7362947)
chr5 (160-212)||(43300238-43300290)
chr5 (212-252)||(3174161-3174201)
chr5 (212-252)||(10572700-10572740)
chr5 (164-212)||(41958605-41958653)
[»] scaffold0393 (1 HSPs)
scaffold0393 (157-212)||(11169-11224)
[»] scaffold0285 (1 HSPs)
scaffold0285 (167-212)||(8383-8428)
[»] scaffold0054 (1 HSPs)
scaffold0054 (167-212)||(2927-2972)
[»] scaffold1084 (1 HSPs)
scaffold1084 (159-212)||(1267-1324)


Alignment Details
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 11 - 252
Target Start/End: Original strand, 780195 - 780457
Alignment:
Q  11 cacagacacctagagataagcagaacattcttgtcttactaaaacatttttgcagcaatca----------aaaactcaaaaattcaatttcacatt--- 97  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||          ||||||||||||||||||||||||||       
T  780195 cacaaacacctagagataagcagaacattcttgtcttactaaaacatttttgtagcaatcactagcaatcaaaaactcaaaaattcaatttcacattact 780294  T
Q  98 --------actaaatacacatacaaaattacaaatcattaccagaatattaaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatca 189  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  780295 aaatcattactaaatacacatacaaaattacaaatcattaccagaatattaaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatca 780394  T
Q  190 gaattgaaggaaattacattcaaattagggtttgtggagaaggatggatggagatatctctct 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  780395 gaattgaaggaaattacattcaaattagggtttgtggagaaggatggatggagatagctctct 780457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 215
Target Start/End: Original strand, 774513 - 774738
Alignment:
Q  11 cacagacacctagagataagcagaacattcttgtcttactaaaacatttttgcagcaatca----------aaaactcaaaaattcaatttcacattact 100  Q
    |||| ||| ||||||||||||||||||||| || |||||||||||||||||| ||||||||          ||||||||||||||||||||||||| |||    
T  774513 cacaaacaactagagataagcagaacattcatgacttactaaaacatttttgtagcaatcagtagcaatcaaaaactcaaaaattcaatttcacatcact 774612  T
Q  101 aaat-----------acacatacaaaattacaaatcattaccagaatattaaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatca 189  Q
    ||||           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||    
T  774613 aaatcattactaaacacacatacaaaattacaaatcattaccagaatattaaattcaatttcacagtactaaagaacatgtaattatcatatcagaatca 774712  T
Q  190 gaattgaaggaaattacattcaaatt 215  Q
    ||||||||||||||||||||||||||    
T  774713 gaattgaaggaaattacattcaaatt 774738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 26 - 215
Target Start/End: Complemental strand, 6786708 - 6786499
Alignment:
Q  26 ataagcagaacattcttgtcttactaaaacatttttgcagcaa----------tcaaaaactcaaaaattcaatttcacattactaaat----------- 104  Q
    ||||||||||||||| ||||||||||||||||||||| |||||          ||||||||||||||||||||||||||||||||||||               
T  6786708 ataagcagaacattcatgtcttactaaaacatttttgtagcaaacagtagcaatcaaaaactcaaaaattcaatttcacattactaaatcattactaaac 6786609  T
Q  105 acacatacaaaattacaaatcattaccagaatattaaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaatt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||    
T  6786608 acacatacaaaattacaaatcattaccagaatattaaattcaatttcacattactaaa-aacatgtaatcatcaaatcaaaatcagaattgaaggaagtt 6786510  T
Q  205 acattcaaatt 215  Q
    |||||||||||    
T  6786509 acattcaaatt 6786499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 22432274 - 22432346
Alignment:
Q  140 aaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22432274 aaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 22432346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 29182558 - 29182630
Alignment:
Q  140 aaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29182558 aaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 29182630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 27576905 - 27576827
Alignment:
Q  140 aaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatca------gaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||    
T  27576905 aaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaatcagaattgaaggaaattacattcaa 27576827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 1668224 - 1668169
Alignment:
Q  157 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  1668224 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa 1668169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 16658939 - 16658884
Alignment:
Q  157 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  16658939 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa 16658884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 38521226 - 38521281
Alignment:
Q  157 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  38521226 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa 38521281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 774763 - 774803
Alignment:
Q  212 aattagggtttgtggagaaggatggatggagatatctctct 252  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  774763 aattagggtttgtggagaaggatggatggagatagctctct 774803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 22014954 - 22014899
Alignment:
Q  157 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||| ||||||||||||||  | ||||| ||||||||||||||||||||||    
T  22014954 actaaagaatatgtaatcatcaaacaataatcataattgaaggaaattacattcaa 22014899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 11472357 - 11472414
Alignment:
Q  159 taaagaacatgtaatcatcaaatcagaatca----gaattgaaggaaattacattcaa 212  Q
    |||||||||||||||||||| ||||||||||     ||||||||||||||||||||||    
T  11472357 taaagaacatgtaatcatcatatcagaatcataattaattgaaggaaattacattcaa 11472414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 22432373 - 22432413
Alignment:
Q  212 aattagggtttgtggagaaggatggatggagatatctctct 252  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  22432373 aattagggtttgtggagagagatggatggagatagctctct 22432413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 27576800 - 27576760
Alignment:
Q  212 aattagggtttgtggagaaggatggatggagatatctctct 252  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  27576800 aattagggtttgtggagagagatggatggagatagctctct 27576760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 29182657 - 29182697
Alignment:
Q  212 aattagggtttgtggagaaggatggatggagatatctctct 252  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  29182657 aattagggtttgtggagagagatggatggagatagctctct 29182697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 32397517 - 32397294
Alignment:
Q  11 cacagacacctagagataagcagaacattcttgtcttactaaaacatttttgcagcaatca----------aaaactcaaaaattcaatttcacattact 100  Q
    |||| ||||||||| ||||||||||||||| ||||||||||||||||||||| ||||||||          |||||||||||| ||||||||||||||||    
T  32397517 cacaaacacctagaaataagcagaacattcatgtcttactaaaacatttttgtagcaatcagtagcaatcaaaaactcaaaaaatcaatttcacattact 32397418  T
Q  101 aaat---------acacatacaaaattacaaatcattaccagaatattaaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcaga 191  Q
    ||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32397417 aaatcattactaaacacatacaaaattacaaatcattaccagaatattaaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcaga 32397318  T
Q  192 attgaaggaaattacattcaaatt 215  Q
    ||||||||||||||||||||||||    
T  32397317 attgaaggaaattacattcaaatt 32397294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 32397269 - 32397229
Alignment:
Q  212 aattagggtttgtggagaaggatggatggagatatctctct 252  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  32397269 aattagggtttgtggagaaggatggatggagatagctctct 32397229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 26 - 215
Target Start/End: Complemental strand, 26355277 - 26355067
Alignment:
Q  26 ataagcagaacattcttgtcttactaaaacatttttgcagcaatca----------aaaactcaaaaattcaatttcacattactaaat----------- 104  Q
    ||||||||||||||| ||||||||||||||||||||| ||||||||          |||||||||||||||||||||||||||||||||               
T  26355277 ataagcagaacattcatgtcttactaaaacatttttgtagcaatcagtagcaatcaaaaactcaaaaattcaatttcacattactaaatcattactaaac 26355178  T
Q  105 acacatacaaaattacaaatcattaccagaatattaaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaatt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  26355177 acacatacaaaattacaaatcattaccagaatattaaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaagtt 26355078  T
Q  205 acattcaaatt 215  Q
    |||||||||||    
T  26355077 acattcaaatt 26355067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 29599234 - 29599306
Alignment:
Q  140 aaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29599234 aaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 29599306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 324815 - 324743
Alignment:
Q  140 aaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  324815 aaattcaatttcacattactaaagaacatctaatcatcaaatcagaatcagaattgaaggaaattacattcaa 324743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 26014601 - 26014531
Alignment:
Q  142 attcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26014601 attcaatttcacattactaaataacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 26014531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 48184369 - 48184303
Alignment:
Q  140 aaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||    
T  48184369 aaattcaatttcacattactaaagaacatgtaatcatcaaatca------gaattgaaggaaattacattcaa 48184303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 6165049 - 6165094
Alignment:
Q  167 atgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||    
T  6165049 atgtaatcatcaaatcagaatcagaattgaagacaattacattcaa 6165094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 10801568 - 10801613
Alignment:
Q  167 atgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||    
T  10801568 atgtaatcatcaaatcagaatcagaattgaagacaattacattcaa 10801613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 16764537 - 16764582
Alignment:
Q  167 atgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||    
T  16764537 atgtaatcatcaaatcagaatcagaattgaagacaattacattcaa 16764582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 26355042 - 26355002
Alignment:
Q  212 aattagggtttgtggagaaggatggatggagatatctctct 252  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  26355042 aattagggtttgtggagaaggatggatggagatagctctct 26355002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 212
Target Start/End: Original strand, 17480990 - 17481042
Alignment:
Q  160 aaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    |||||||||||||||||||||  | ||||| | |||||||||| |||||||||    
T  17480990 aaagaacatgtaatcatcaaagaataatcatatttgaaggaaaatacattcaa 17481042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 29599333 - 29599373
Alignment:
Q  212 aattagggtttgtggagaaggatggatggagatatctctct 252  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  29599333 aattagggtttgtggagagagatggatggagatagctctct 29599373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 48184276 - 48184236
Alignment:
Q  212 aattagggtttgtggagaaggatggatggagatatctctct 252  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  48184276 aattagggtttgtggagagagatggatggagatagctctct 48184236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 100 - 212
Target Start/End: Complemental strand, 47826084 - 47825972
Alignment:
Q  100 taaatacacatacaaaattacaaatcattaccagaatattaaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaagg 199  Q
    |||| ||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47826084 taaagacacatacacaattgcaaatcattacccgaatattaaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaagg 47825985  T
Q  200 aaattacattcaa 212  Q
    |||||||||||||    
T  47825984 aaattacattcaa 47825972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 21604562 - 21604490
Alignment:
Q  140 aaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21604562 aaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 21604490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 46164349 - 46164421
Alignment:
Q  140 aaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46164349 aaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 46164421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 79 - 173
Target Start/End: Original strand, 54785073 - 54785175
Alignment:
Q  79 aaaaattcaatttcacattactaaat--------acacatacaaaattacaaatcattaccagaatattaaattcaatttcacattactaaagaacatgt 170  Q
    ||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  54785073 aaaaattcaatttcacattactaaatcatcaaagacacatacaaaattacaaatcattaccagaatattacattcaatttcacattactaaagaacatgt 54785172  T
Q  171 aat 173  Q
    |||    
T  54785173 aat 54785175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 8432965 - 8433035
Alignment:
Q  142 attcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  8432965 attcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaataacattcaa 8433035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 21355986 - 21355931
Alignment:
Q  157 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21355986 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 21355931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 13740252 - 13740307
Alignment:
Q  157 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  13740252 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa 13740307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 23218220 - 23218275
Alignment:
Q  157 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  23218220 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa 23218275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 45144091 - 45144036
Alignment:
Q  157 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  45144091 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa 45144036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 45152860 - 45152805
Alignment:
Q  157 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  45152860 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa 45152805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 54785192 - 54785243
Alignment:
Q  161 aagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  54785192 aagaacatgtaatcatcaaatcagaatcataattgaaggaaattacattcaa 54785243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 33753972 - 33754018
Alignment:
Q  166 catgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    |||||||||||||||||| ||||| |||||||| |||||||||||||    
T  33753972 catgtaatcatcaaatcaaaatcataattgaagaaaattacattcaa 33754018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 3187588 - 3187641
Alignment:
Q  159 taaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||  ||||||||| || ||||||| |||||||||    
T  3187588 taaagaacatgtaatcatcaaagaagaatcagatttaaaggaaaatacattcaa 3187641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 21604463 - 21604423
Alignment:
Q  212 aattagggtttgtggagaaggatggatggagatatctctct 252  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  21604463 aattagggtttgtggagagagatggatggagatagctctct 21604423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 38115562 - 38115505
Alignment:
Q  159 taaagaacatgtaatcatcaaatcagaatca----gaattgaaggaaattacattcaa 212  Q
    |||| ||||||||||||||| ||||||||||     ||||||||||||||||||||||    
T  38115562 taaaaaacatgtaatcatcatatcagaatcataattaattgaaggaaattacattcaa 38115505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 46164448 - 46164488
Alignment:
Q  212 aattagggtttgtggagaaggatggatggagatatctctct 252  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  46164448 aattagggtttgtggagagagatggatggagatagctctct 46164488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 47825945 - 47825905
Alignment:
Q  212 aattagggtttgtggagaaggatggatggagatatctctct 252  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  47825945 aattagggtttgtggagagagatggatggagatagctctct 47825905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 100 - 212
Target Start/End: Original strand, 35012917 - 35013029
Alignment:
Q  100 taaatacacatacaaaattacaaatcattaccagaatattaaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaagg 199  Q
    |||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||| ||||||||    
T  35012917 taaagacacatacacaattacaaatcattaccagaatattacattcaatttcacattactcaagaacatgtaattatcaaatcagaatcaggattgaagg 35013016  T
Q  200 aaattacattcaa 212  Q
    |||||||||||||    
T  35013017 aaattacattcaa 35013029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 9371943 - 9371871
Alignment:
Q  140 aaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9371943 aaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 9371871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 21358005 - 21358077
Alignment:
Q  140 aaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21358005 aaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 21358077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 6472229 - 6472299
Alignment:
Q  142 attcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6472229 attcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 6472299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 44660428 - 44660373
Alignment:
Q  157 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    |||||||||||||||||||| |||  | ||||||||||||| ||||||||||||||    
T  44660428 actaaagaacatgtaatcattaaagaaaaatcagaattgaacgaaattacattcaa 44660373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 6472326 - 6472366
Alignment:
Q  212 aattagggtttgtggagaaggatggatggagatatctctct 252  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  6472326 aattagggtttgtggagagagatggatggagatagctctct 6472366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 9371844 - 9371804
Alignment:
Q  212 aattagggtttgtggagaaggatggatggagatatctctct 252  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  9371844 aattagggtttgtggagagagatggatggagatagctctct 9371804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 21358104 - 21358144
Alignment:
Q  212 aattagggtttgtggagaaggatggatggagatatctctct 252  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  21358104 aattagggtttgtggagagagatggatggagatagctctct 21358144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 35013056 - 35013096
Alignment:
Q  212 aattagggtttgtggagaaggatggatggagatatctctct 252  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  35013056 aattagggtttgtggagagagatggatggagatagctctct 35013096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 9456550 - 9456478
Alignment:
Q  140 aaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9456550 aaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 9456478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 21239554 - 21239499
Alignment:
Q  157 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21239554 actaaagaacatgtaatcatcaaatcataatcagaattgaaggaaattacattcaa 21239499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 52893550 - 52893495
Alignment:
Q  157 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  52893550 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa 52893495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Original strand, 2338818 - 2338869
Alignment:
Q  159 taaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    |||||||||||||||   ||||||| ||||| ||||||||||||||||||||||    
T  2338818 taaagaacatgtaata--caaatcataatcataattgaaggaaattacattcaa 2338869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 142 - 212
Target Start/End: Original strand, 25697552 - 25697622
Alignment:
Q  142 attcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25697552 attcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 25697622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 3935372 - 3935427
Alignment:
Q  157 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||    
T  3935372 actaaagaacatgtaatcatcaaattataatcataattgaaggaaattacattcaa 3935427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 212
Target Start/End: Complemental strand, 32339652 - 32339606
Alignment:
Q  166 catgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||    
T  32339652 catgtaatcatcaaatcagaatcataattgaagaaaattacattcaa 32339606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 212
Target Start/End: Original strand, 38978382 - 38978428
Alignment:
Q  166 catgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||    
T  38978382 catgtaatcatcaaatcataatcataattgaaggaaattacattcaa 38978428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Original strand, 25697649 - 25697689
Alignment:
Q  212 aattagggtttgtggagaaggatggatggagatatctctct 252  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  25697649 aattagggtttgtggagagagatggatggagatagctctct 25697689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 140 - 212
Target Start/End: Complemental strand, 32863780 - 32863708
Alignment:
Q  140 aaattcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32863780 aaattcaatttcacaatactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 32863708  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 10572837 - 10572767
Alignment:
Q  142 attcaatttcacattactaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10572837 attcaatttcacattactaaagaacatgtaatcatcaaatcagaatcacaattgaaggaaattacattcaa 10572767  T

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Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 229
Target Start/End: Original strand, 18739403 - 18739473
Alignment:
Q  157 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaaattagggtttgtggaga 229  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||| |  ||||||||||||||||||    
T  18739403 actaaataacatgtaatcatcaaatcagaatcataattgaaggaaattacaat--aattagggtttgtggaga 18739473  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 3174283 - 3174228
Alignment:
Q  157 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  3174283 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa 3174228  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 19209112 - 19209167
Alignment:
Q  157 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    |||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||    
T  19209112 actaaagaacatgtaatcattaaagcagaatcagatttgaaggaaattacattcaa 19209167  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 212
Target Start/End: Complemental strand, 23738001 - 23737946
Alignment:
Q  157 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    |||||||||||||||||||| |||  ||||||||| ||||||||||||||||||||    
T  23738001 actaaagaacatgtaatcattaaagaagaatcagatttgaaggaaattacattcaa 23737946  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 7362947 - 7362907
Alignment:
Q  11 cacagacacctagagataagcagaacattcttgtcttacta 51  Q
    |||| ||||||||||||||||||||||||| ||||||||||    
T  7362947 cacaaacacctagagataagcagaacattcatgtcttacta 7362907  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 43300290 - 43300238
Alignment:
Q  160 aaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||| |||  | ||||||||||||| ||||||||||||||    
T  43300290 aaagaacatgtaatcattaaagaaaaatcagaattgaacgaaattacattcaa 43300238  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 3174201 - 3174161
Alignment:
Q  212 aattagggtttgtggagaaggatggatggagatatctctct 252  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  3174201 aattagggtttgtggagagagatggatggagatagctctct 3174161  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 252
Target Start/End: Complemental strand, 10572740 - 10572700
Alignment:
Q  212 aattagggtttgtggagaaggatggatggagatatctctct 252  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  10572740 aattagggtttgtggagagagatggatggagatagctctct 10572700  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 212
Target Start/End: Original strand, 41958605 - 41958653
Alignment:
Q  164 aacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||| |||  | ||||||||||||| ||||||||||||||    
T  41958605 aacatgtaatcattaaagaaaaatcagaattgaacgaaattacattcaa 41958653  T

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Target: scaffold0393 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 212
Target Start/End: Original strand, 11169 - 11224
Alignment:
Q  157 actaaagaacatgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  11169 actaaagaacatgtaatcatcaaatcataatcataattgaaggaaattacattcaa 11224  T

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Target: scaffold0285 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 212
Target Start/End: Original strand, 8383 - 8428
Alignment:
Q  167 atgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||    
T  8383 atgtaatcatcaaatcagaatcagaattgaagacaattacattcaa 8428  T

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Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 167 - 212
Target Start/End: Complemental strand, 2972 - 2927
Alignment:
Q  167 atgtaatcatcaaatcagaatcagaattgaaggaaattacattcaa 212  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||    
T  2972 atgtaatcatcaaatcagaatcagaattgaagacaattacattcaa 2927  T

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Target: scaffold1084 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1084
Description:

Target: scaffold1084; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 1324 - 1267
Alignment:
Q  159 taaagaacatgtaatcatcaaatcagaatca----gaattgaaggaaattacattcaa 212  Q
    |||| ||||||||||||||| ||||||||||     ||||||||||||||||||||||    
T  1324 taaaaaacatgtaatcatcatatcagaatcataattaattgaaggaaattacattcaa 1267  T

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