View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_high_39 (Length: 256)
Name: NF3234_high_39
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_high_39 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 32587315 - 32587094
Alignment:
| Q |
16 |
actttaacacttcctcaattgggtttttcacctgtatagcattaacacttctaattgaagttgcgtctactttccaacatcgacacgacactgacactga |
115 |
Q |
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| T |
32587315 |
actttaacacttcctcaattgggtttttcacctgtatagcattaacacttctaattgaaggtgtgtctactgtccaacatcg-----acactgacactga |
32587221 |
T |
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| Q |
116 |
cacatgggattacattcaattatgttttgacatcagattataaattgctaaactcaacaacacacatatcagcagcacccacacaattatcgtagttttg |
215 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
32587220 |
cacatgtgattacattcaattatgttttgacatcagattataaattgctaaact---caacacacagatcagcagcacccacacaattatcgtagttttg |
32587124 |
T |
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| Q |
216 |
tgtgctataatctcttgggtttgtattcat |
245 |
Q |
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| T |
32587123 |
tgtgctataatctcttgggtttgtattcat |
32587094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 32662628 - 32662556
Alignment:
| Q |
173 |
caacacacatatcagcagcacccacacaattatcgtagttttgtgtgctataatctcttgggtttgtattcat |
245 |
Q |
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| T |
32662628 |
caacacacatgtcagcagcacccacacacttatcgtagttttgtgtactataagctcttgggtttgtattcat |
32662556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 242
Target Start/End: Complemental strand, 32636954 - 32636885
Alignment:
| Q |
173 |
caacacacatatcagcagcacccacacaattatcgtagttttgtgtgctataatctcttgggtttgtatt |
242 |
Q |
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| T |
32636954 |
caacacacatgtaagtagcatccacacacttatcgtagttttgtgtgctatgagcttttgggtttgtatt |
32636885 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 32638506 - 32638457
Alignment:
| Q |
88 |
tccaacatcgacacgacactgacactgacacatgggattacattcaattat |
138 |
Q |
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| T |
32638506 |
tccaacaccgacacgacac-gacactgacacatgtgattacattcaattat |
32638457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 40 - 75
Target Start/End: Complemental strand, 32638579 - 32638544
Alignment:
| Q |
40 |
ttttcacctgtatagcattaacacttctaattgaag |
75 |
Q |
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| T |
32638579 |
ttttcacctgtatagcatcaacacttctaattgaag |
32638544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 173 - 242
Target Start/End: Original strand, 55863362 - 55863431
Alignment:
| Q |
173 |
caacacacatatcagcagcacccacacaattatcgtagttttgtgtgctataatctcttgggtttgtatt |
242 |
Q |
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| T |
55863362 |
caacacacatgtcagtagcatccacacaattgtcgtagttttgtgtgctataagctcttgggtttgtatt |
55863431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 140
Target Start/End: Original strand, 39621490 - 39621527
Alignment:
| Q |
103 |
acactgacactgacacatgggattacattcaattatgt |
140 |
Q |
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| T |
39621490 |
acacagacactgacacatgtgattacattcaattatgt |
39621527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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