View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3234_high_40 (Length: 251)

Name: NF3234_high_40
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3234_high_40
NF3234_high_40
[»] chr1 (3 HSPs)
chr1 (2-228)||(32587487-32587718)
chr1 (2-71)||(32664081-32664150)
chr1 (2-77)||(32638803-32638878)
[»] chr8 (4 HSPs)
chr8 (37-71)||(11259367-11259401)
chr8 (7-80)||(41152229-41152302)
chr8 (6-79)||(41167468-41167541)
chr8 (7-75)||(41144266-41144334)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 2 - 228
Target Start/End: Original strand, 32587487 - 32587718
Alignment:
Q  2 gatggaattcaacaaagaactcttgtatggcctcattaatcatttccaccttgtaatcactcatcatcctgattcacaataaaaagattagaaggttc-- 99  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  32587487 gatggaattcaacaaagaactcttgtatggcatcattaatcatttccaccttgtaatcactcatcatcctgattcacaataaaaagattagaaggttcag 32587586  T
Q  100 ----agaggaaggaaagacaacaaaattccnnnnnnnnnnnctcttcgaaatcagaaacaaaattaaattaattaatcaattgatggatcggatgaatgg 195  Q
        ||||||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  32587587 aggaagaggaaggaaagacaacaaaattcc-aaaaaaaaaactcttcgaaatcagaaacaaaattaaattaattaatcaattgatggatcgtatgaatgg 32587685  T
Q  196 tggattaatggattaaattgtcatccatagttt 228  Q
    |||||||||||||||||||||||||||||||||    
T  32587686 tggattaatggattaaattgtcatccatagttt 32587718  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 71
Target Start/End: Original strand, 32664081 - 32664150
Alignment:
Q  2 gatggaattcaacaaagaactcttgtatggcctcattaatcatttccaccttgtaatcactcatcatcct 71  Q
    |||||||||||||||| |||| |||  |||| | ||| ||||||||||||||||||||||||||||||||    
T  32664081 gatggaattcaacaaaaaactgttgcgtggcattattgatcatttccaccttgtaatcactcatcatcct 32664150  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 2 - 77
Target Start/End: Original strand, 32638803 - 32638878
Alignment:
Q  2 gatggaattcaacaaagaactcttgtatggcctcattaatcatttccaccttgtaatcactcatcatcctgattca 77  Q
    |||| ||||||| ||| |||| ||| ||| | ||||| ||||| | ||||||||||||||||||||||||| ||||    
T  32638803 gatgaaattcaagaaaaaactgttgcatgacatcattgatcatcttcaccttgtaatcactcatcatcctgcttca 32638878  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 37 - 71
Target Start/End: Complemental strand, 11259401 - 11259367
Alignment:
Q  37 ttaatcatttccaccttgtaatcactcatcatcct 71  Q
    |||||||||||||||||||||||||||||||||||    
T  11259401 ttaatcatttccaccttgtaatcactcatcatcct 11259367  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 41152229 - 41152302
Alignment:
Q  7 aattcaacaaagaactcttgtatggcctcattaatcatttccaccttgtaatcactcatcatcctgattcacaa 80  Q
    |||| ||||||||||||||| ||| |  |||| ||||| ||||| ||||||||| |||||| ||||||||||||    
T  41152229 aattgaacaaagaactcttgcatgccaccattgatcatctccactttgtaatcagtcatcaacctgattcacaa 41152302  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 79
Target Start/End: Original strand, 41167468 - 41167541
Alignment:
Q  6 gaattcaacaaagaactcttgtatggcctcattaatcatttccaccttgtaatcactcatcatcctgattcaca 79  Q
    |||||||| |||||| ||||| ||| | ||||| ||||| || || |||| |||| ||||||||||||||||||    
T  41167468 gaattcaagaaagaattcttgcatgccatcattgatcatctcgactttgtgatcaatcatcatcctgattcaca 41167541  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 75
Target Start/End: Original strand, 41144266 - 41144334
Alignment:
Q  7 aattcaacaaagaactcttgtatggcctcattaatcatttccaccttgtaatcactcatcatcctgatt 75  Q
    |||| |||||| |||||||| |||   ||||| ||||| |||||||| |||||| ||||||||||||||    
T  41144266 aattgaacaaaaaactcttgcatgcaatcattgatcatctccaccttataatcagtcatcatcctgatt 41144334  T

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