View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_high_49 (Length: 237)
Name: NF3234_high_49
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_high_49 |
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Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 1139212 - 1138993
Alignment:
| Q |
1 |
atgtgaaaaatcaggtggtggattgaggctaaaggatggatcttggaatttatggatttgaatgttgaatgaaaaatctttaacacaaaaagtgagtgtg |
100 |
Q |
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| T |
1139212 |
atgtgaaaaatcaggtggtggattgaggctaaaggatggatcttggaatttatggatttgaatgttgaatgaaaaatctttaacacaaaaagtgagtgtg |
1139113 |
T |
|
| Q |
101 |
ataccgatgagtaaaccaaaaccaaagattagggcataagtaaagaagtttagtagatggagttgagctttgaaaaaattaagatatgatgaggttatgt |
200 |
Q |
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| T |
1139112 |
ataccgatgagtaaaccaaaaccaaagattagggc-taagtaaagaagtttagtagatggagttgagctttgaaaaaattaagatatgatgaggttatgt |
1139014 |
T |
|
| Q |
201 |
ttcgatgataggtattgttct |
221 |
Q |
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||||||||| ||||||||||| |
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| T |
1139013 |
ttcgatgatcggtattgttct |
1138993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 4 - 221
Target Start/End: Complemental strand, 1136001 - 1135784
Alignment:
| Q |
4 |
tgaaaaatcaggtggtggattgaggctaaaggatggatcttggaatttatggatttgaatgttgaatgaaaaatctttaacacaaaaagtgagtgtgata |
103 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||| ||| |
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| T |
1136001 |
tgaaaaatgaggtggtggattgaggcttaaggatggatcttggaagttttggatttgaaagttgaaagaaaaatctttaacacaaaaagtgagtgtcata |
1135902 |
T |
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| Q |
104 |
ccgatgagtaaaccaaaaccaaagattagggcataagtaaagaagtttagtagatggagttgagctttgaaaaaattaagatatgatgaggttatgtttc |
203 |
Q |
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| T |
1135901 |
ccaatgagtaaaccaaaactaaagattagggcataagtaaagaagtttagtagatggagttgagctttgaaaaaattaaaatacgatgaagctatgcttc |
1135802 |
T |
|
| Q |
204 |
gatgataggtattgttct |
221 |
Q |
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| |||| ||||||||||| |
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| T |
1135801 |
gttgatcggtattgttct |
1135784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 13 - 128
Target Start/End: Original strand, 54479528 - 54479643
Alignment:
| Q |
13 |
aggtggtggattgaggctaaaggatggatcttggaatttatggatttgaatgttgaatgaaaaatctttaacacaaaaagtgagtgtgataccgatgagt |
112 |
Q |
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|||||||||||||| ||||||||||||||||||| |||| |||||||||| ||||||||||| || ||| ||||| |||||||||||||| || |||||| |
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| T |
54479528 |
aggtggtggattgaagctaaaggatggatcttgggatttttggatttgaaagttgaatgaaatatttttgacacacaaagtgagtgtgatgccaatgagt |
54479627 |
T |
|
| Q |
113 |
aaaccaaaaccaaaga |
128 |
Q |
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| T |
54479628 |
aaaccacaaccaaaga |
54479643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 31269394 - 31269501
Alignment:
| Q |
19 |
tggattgaggctaaaggatggatcttggaatttatggatttgaatgttgaatgaaaaatctttaacacaaaaagtgagtgtgataccgatgagtaaacca |
118 |
Q |
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|||||||| |||||| | ||||||||| |||| |||| ||||| |||||||||| || ||| | |||||||||||| |||||||| |||||||||||| |
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| T |
31269394 |
tggattgaagctaaaaggtggatcttgaaattgttggaattgaaaattgaatgaaacatttttgagacaaaaagtgagagtgataccaatgagtaaacca |
31269493 |
T |
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| Q |
119 |
aaaccaaa |
126 |
Q |
| |
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| |||||| |
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| T |
31269494 |
agaccaaa |
31269501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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