View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_high_53 (Length: 227)
Name: NF3234_high_53
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_high_53 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 5182006 - 5182231
Alignment:
| Q |
1 |
agaacaatccttgacatggactcagttttgatgaatataagattatgcattacggctttaaggtatgcatcaatgggacagactaataagtggccaagtt |
100 |
Q |
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| T |
5182006 |
agaataatccttgacatggactc-gttttgatgaacataagattatgcattacggctttaaggtatgcatcaatgggatagactaataagtggccaagtt |
5182104 |
T |
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| Q |
101 |
ttccagcaacaaatgatatttcaaaaggcaatggatgaaatatggcctaaaaatgtgtttgtataagtgagggcactctccacagttgattttgtaaagt |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
5182105 |
ttccagcaacaaatgatatttcaaaagccaatggatgaaatatggcctaaaaatatctttgtataagtcaggacactctccacagttgattttgtaaagt |
5182204 |
T |
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| Q |
201 |
tgaattagtccaactcaaattttcaat |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
5182205 |
tgaattagtccaactcaaattttcaat |
5182231 |
T |
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