View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_high_54 (Length: 227)
Name: NF3234_high_54
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_high_54 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 43394569 - 43394343
Alignment:
| Q |
1 |
tctagtttaatattattatcattgtctcgcacatgattatcttccgttgagataatttgtgacagnnnnnnnn-tcatttgtcattacttgttttaaaaa |
99 |
Q |
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| T |
43394569 |
tctagtttaatattattatcattgtctcgcacatgattatcttccgttgagataatttgtgacagaaaaaaaaatcatttgtcattacttgttttaaaaa |
43394470 |
T |
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| Q |
100 |
tatataactcaaataattgtaaatttagggagaaatgataggaggtacaataaagaggctatttagacatatcaaaaaatgatttttaggttaaattaca |
199 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
43394469 |
tatataactcaaataattgtaaatatagggagaaatgataggaggtacaataaagaggctatttagacatatca-aaaatgatttttaggttaaattaca |
43394371 |
T |
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| Q |
200 |
tgaatttaatttaatttcaaactattac |
227 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
43394370 |
tgaatttaatttaatttcaaactattac |
43394343 |
T |
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