View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3234_high_56 (Length: 222)

Name: NF3234_high_56
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3234_high_56
NF3234_high_56
[»] chr7 (8 HSPs)
chr7 (1-161)||(43444405-43444565)
chr7 (55-142)||(17889518-17889605)
chr7 (55-173)||(17888532-17888650)
chr7 (68-137)||(17890406-17890475)
chr7 (102-164)||(48626817-48626878)
chr7 (116-172)||(43443501-43443557)
chr7 (194-222)||(39458592-39458620)
chr7 (129-173)||(45223769-45223813)
[»] chr4 (6 HSPs)
chr4 (53-173)||(46514885-46515005)
chr4 (52-173)||(46514196-46514317)
chr4 (77-173)||(16897598-16897694)
chr4 (55-118)||(53523703-53523766)
chr4 (55-173)||(44817729-44817847)
chr4 (55-162)||(33352899-33353006)
[»] chr1 (8 HSPs)
chr1 (22-165)||(13259614-13259756)
chr1 (55-162)||(26778866-26778973)
chr1 (52-162)||(29117386-29117496)
chr1 (53-162)||(29116709-29116818)
chr1 (55-161)||(13258964-13259071)
chr1 (55-161)||(27773239-27773345)
chr1 (55-162)||(1170039-1170147)
chr1 (55-137)||(28677229-28677311)
[»] chr2 (3 HSPs)
chr2 (55-162)||(28020777-28020884)
chr2 (68-162)||(28020104-28020198)
chr2 (85-137)||(33045119-33045171)
[»] scaffold0091 (1 HSPs)
scaffold0091 (55-132)||(3581-3658)
[»] chr8 (3 HSPs)
chr8 (55-162)||(33181063-33181170)
chr8 (55-162)||(526795-526902)
chr8 (57-162)||(33180913-33181017)
[»] chr3 (1 HSPs)
chr3 (77-162)||(42933479-42933564)


Alignment Details
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 43444405 - 43444565
Alignment:
Q  1 cgtagaggcaggtttgggagctgtgttagaacctggtgataaaaagaaggcagcgatggtccatgttatgtttattttggtacattaaatctaagccttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43444405 cgtagaggcaggtttgggagctgtgttagaacctggtgataaaaagaaggcagcgatggtccatgttatgtttattttggtacattaaatctaagccttt 43444504  T
Q  101 cattttaatctaaagggttgacaatgtattctcatattctcaaataaagaagtcattctca 161  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  43444505 cattttaatctaaagggttgacaatgtattctcacattctcaaataaagaagtcattctca 43444565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 17889605 - 17889518
Alignment:
Q  55 gatggtccatgttatgtttattttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattctcatattctca 142  Q
    |||||||||  | |||||| | ||||||||||||||||||||| | ||||||||||| ||||| ||| ||||||||||||||||||||    
T  17889605 gatggtccacatgatgtttttattggtacattaaatctaagccctccattttaatctgaagggctgataatgtattctcatattctca 17889518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 55 - 173
Target Start/End: Complemental strand, 17888650 - 17888532
Alignment:
Q  55 gatggtccatgttatgtttattttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattctcatattctcaaataaagaagtc 154  Q
    ||||||| || | |||||| | ||||||||||||||||||| | | ||||||||||| || || | | |||||||||||| ||||||| |||| ||||||    
T  17888650 gatggtctatatgatgtttttattggtacattaaatctaagtcctccattttaatctgaatggctaataatgtattctcacattctcatataaggaagtc 17888551  T
Q  155 attctcacatgatacatcc 173  Q
    ||||||||  |||||||||    
T  17888550 attctcactggatacatcc 17888532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 137
Target Start/End: Original strand, 17890406 - 17890475
Alignment:
Q  68 atgtttattttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattctcatat 137  Q
    |||||| | ||||||||||||||||||||| | ||||||||||| ||||||||| |||||||||||||||    
T  17890406 atgtttttattggtacattaaatctaagccctccattttaatctgaagggttgataatgtattctcatat 17890475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 48626817 - 48626878
Alignment:
Q  102 attttaatctaaagggttgacaatgtattctcatattctcaaataaagaagtcattctcacat 164  Q
    |||||||| |||||| || | |||||||||||| ||||||| |||||||||||||||||||||    
T  48626817 attttaatataaaggctt-ataatgtattctcacattctcacataaagaagtcattctcacat 48626878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 172
Target Start/End: Complemental strand, 43443557 - 43443501
Alignment:
Q  116 ggttgacaatgtattctcatattctcaaataaagaagtcattctcacatgatacatc 172  Q
    |||||| ||| |||||||| ||||||| ||||||  |||||||||||||||||||||    
T  43443557 ggttgataatatattctcacattctcatataaagttgtcattctcacatgatacatc 43443501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 194 - 222
Target Start/End: Complemental strand, 39458620 - 39458592
Alignment:
Q  194 acttcaatagtcctcataatattaactca 222  Q
    |||||||||||||||||||||||||||||    
T  39458620 acttcaatagtcctcataatattaactca 39458592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 45223813 - 45223769
Alignment:
Q  129 ttctcatattctcaaataaagaagtcattctcacatgatacatcc 173  Q
    |||||| ||||||| ||||||  ||||||||||||||||||||||    
T  45223813 ttctcacattctcatataaagttgtcattctcacatgatacatcc 45223769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 53 - 173
Target Start/End: Original strand, 46514885 - 46515005
Alignment:
Q  53 gcgatggtccatgttatgtttattttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattctcatattctcaaataaagaag 152  Q
    |||||||||||  | ||||||||||||| || ||||||||||||||||||||||||||||||||| ||| | |||||||||| ||||||| ||||  |||    
T  46514885 gcgatggtccacctgatgtttattttggaactttaaatctaagcctttcattttaatctaaagggctgatattgtattctcacattctcatataacaaag 46514984  T
Q  153 tcattctcacatgatacatcc 173  Q
    |||||||||  ||||||||||    
T  46514985 tcattctcatgtgatacatcc 46515005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 52 - 173
Target Start/End: Complemental strand, 46514317 - 46514196
Alignment:
Q  52 agcgatggtccatgttatgtttattttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattctcatattctcaaataaagaa 151  Q
    ||||||||||||  | ||||||||||||| || ||||||||||| ||||||||||||||||||||| ||| | |||||||||| ||||||| ||||  ||    
T  46514317 agcgatggtccacctgatgtttattttggaactttaaatctaagtctttcattttaatctaaagggctgatattgtattctcacattctcatataacaaa 46514218  T
Q  152 gtcattctcacatgatacatcc 173  Q
    ||||||||||  ||||||||||    
T  46514217 gtcattctcatgtgatacatcc 46514196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 16897694 - 16897598
Alignment:
Q  77 ttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattctcatattctcaaataaagaagtcattctcacatgatacatcc 173  Q
    ||||||||||||||||||||| | ||||||||||| |||||   | |||||||||||| ||||||| |||  ||||||||||||||  |||||||||    
T  16897694 ttggtacattaaatctaagccctccattttaatctgaagggcaaataatgtattctcacattctcacatacggaagtcattctcactagatacatcc 16897598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 55 - 118
Target Start/End: Original strand, 53523703 - 53523766
Alignment:
Q  55 gatggtccatgttatgtttattttggtacattaaatctaagcctttcattttaatctaaagggt 118  Q
    ||||||||| || |||||||||||||||| ||||||||||| ||||||||| ||||||||||||    
T  53523703 gatggtccacgtaatgtttattttggtactttaaatctaagtctttcatttaaatctaaagggt 53523766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 173
Target Start/End: Complemental strand, 44817847 - 44817729
Alignment:
Q  55 gatggtccatgttatgtttattttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattctcatattctcaaataaagaagtc 154  Q
    ||||||| || | |||||| | ||||||||||||||| ||| | | ||||||||||| || || | | |||||||||||| ||||||| |||| ||||||    
T  44817847 gatggtctatatgatgtttttattggtacattaaatccaagtcctccattttaatctgaatggctaataatgtattctcacattctcatataaggaagtc 44817748  T
Q  155 attctcacatgatacatcc 173  Q
    ||||||||  |||||||||    
T  44817747 attctcactggatacatcc 44817729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 55 - 162
Target Start/End: Original strand, 33352899 - 33353006
Alignment:
Q  55 gatggtccatgttatgtttattttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattctcatattctcaaataaagaagtc 154  Q
    ||||||||| || ||| || | |||| ||||||||||||| ||||||||||||||||||| |  ||  ||| |||||||| ||||||| ||||  |||||    
T  33352899 gatggtccacgtgatgcttttattggaacattaaatctaaacctttcattttaatctaaatgactgttaatatattctcacattctcatataagaaagtc 33352998  T
Q  155 attctcac 162  Q
    ||||||||    
T  33352999 attctcac 33353006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 165
Target Start/End: Original strand, 13259614 - 13259756
Alignment:
Q  22 tgtgttagaacctggtgataaaaagaaggcagcgatggtccatgttatgtttattttggtacattaaatctaagcctttcattttaatctaaagggttga 121  Q
    |||||| ||||| || || |||||||||  ||||||||||||  | ||||||||||||| || |||||||||||||||||||||||||||||| || |||    
T  13259614 tgtgttggaacccggagaaaaaaagaaga-agcgatggtccacctgatgtttattttggaactttaaatctaagcctttcattttaatctaaaaggctga 13259712  T
Q  122 caatgtattctcatattctcaaataaagaagtcattctcacatg 165  Q
     | |||||||| | ||||||| ||||| ||||||||||||||||    
T  13259713 tattgtattcttacattctcacataaaaaagtcattctcacatg 13259756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 55 - 162
Target Start/End: Complemental strand, 26778973 - 26778866
Alignment:
Q  55 gatggtccatgttatgtttattttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattctcatattctcaaataaagaagtc 154  Q
    |||||||||  | |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| |||||||   ||| |||||    
T  26778973 gatggtccacataatgtttattttggtacattaaatctaagcctttcatttaaatctaaagggttgataatgcattctcacattctcatgcaaataagtc 26778874  T
Q  155 attctcac 162  Q
    ||||||||    
T  26778873 attctcac 26778866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 52 - 162
Target Start/End: Original strand, 29117386 - 29117496
Alignment:
Q  52 agcgatggtccatgttatgtttattttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattctcatattctcaaataaagaa 151  Q
    ||||||||||||  |||| |||||||||| || ||||||||||||||||||||||||||||||||| ||| | |||||||| | ||||||| ||||||||    
T  29117386 agcgatggtccaccttatatttattttggaactttaaatctaagcctttcattttaatctaaagggctgatattgtattcttacattctcacataaagaa 29117485  T
Q  152 gtcattctcac 162  Q
     ||||||||||    
T  29117486 atcattctcac 29117496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 53 - 162
Target Start/End: Complemental strand, 29116818 - 29116709
Alignment:
Q  53 gcgatggtccatgttatgtttattttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattctcatattctcaaataaagaag 152  Q
    |||||||||||  | ||||||||||||| || |||||||||||||||| |||||||||||||||| ||| | |||||||| | ||||||| ||||||||     
T  29116818 gcgatggtccacctgatgtttattttggaactttaaatctaagccttttattttaatctaaagggctgatattgtattcttacattctcacataaagaaa 29116719  T
Q  153 tcattctcac 162  Q
    ||||||||||    
T  29116718 tcattctcac 29116709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 55 - 161
Target Start/End: Complemental strand, 13259071 - 13258964
Alignment:
Q  55 gatggtccatgttatgtttattttggtacattaaatctaagcc-tttcattttaatctaaagggttgacaatgtattctcatattctcaaataaagaagt 153  Q
    |||||||||  | ||||||||||||| || ||||||||||||| |||||||||||||||||||  ||| | |||||||||| ||||||| ||||||||||    
T  13259071 gatggtccacctgatgtttattttggaactttaaatctaagccatttcattttaatctaaaggactgatattgtattctcacattctcatataaagaagt 13258972  T
Q  154 cattctca 161  Q
    ||||||||    
T  13258971 cattctca 13258964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 55 - 161
Target Start/End: Complemental strand, 27773345 - 27773239
Alignment:
Q  55 gatggtccatgttatgtttattttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattctcatattctcaaataaagaagtc 154  Q
    |||||||||||| |||||| | |||||||||||||| |||||| ||||||||||||| ||||| ||| ||| |||||||| | ||||| ||||  |||||    
T  27773345 gatggtccatgtgatgtttttattggtacattaaatttaagcccttcattttaatctgaagggctgataatatattctcacactctcacataagaaagtc 27773246  T
Q  155 attctca 161  Q
    |||||||    
T  27773245 attctca 27773239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 162
Target Start/End: Original strand, 1170039 - 1170147
Alignment:
Q  55 gatggtccatgttatgtttattttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattctcat-attctcaaataaagaagt 153  Q
    ||||||| || | |||||| | ||||||||||||||||||| | | ||||||||||| || || | | ||||||||||||| ||||||| |||||||||     
T  1170039 gatggtctatatgatgtttttattggtacattaaatctaagtcctccattttaatctgaatggctaataatgtattctcatcattctcacataaagaaga 1170138  T
Q  154 cattctcac 162  Q
    |||||||||    
T  1170139 cattctcac 1170147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 137
Target Start/End: Complemental strand, 28677311 - 28677229
Alignment:
Q  55 gatggtccatgttatgtttattttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattctcatat 137  Q
    |||||||||||||||||||   ||||||| ||||||||||||| | ||||||||||| ||||||  | |||||||||| ||||    
T  28677311 gatggtccatgttatgttttaattggtactttaaatctaagccgtccattttaatctcaagggtcaataatgtattcttatat 28677229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 9e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 55 - 162
Target Start/End: Original strand, 28020777 - 28020884
Alignment:
Q  55 gatggtccatgttatgtttattttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattctcatattctcaaataaagaagtc 154  Q
    |||||||||  | ||||||||||||| || |||||||| ||| |||||||||||||||||||| ||| | |||||||||| ||||||| |||||||||||    
T  28020777 gatggtccacctgatgtttattttggaactttaaatctgagcttttcattttaatctaaagggctgatattgtattctcacattctcagataaagaagtc 28020876  T
Q  155 attctcac 162  Q
    ||||||||    
T  28020877 attctcac 28020884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 68 - 162
Target Start/End: Complemental strand, 28020198 - 28020104
Alignment:
Q  68 atgtttattttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattctcatattctcaaataaagaagtcattctcac 162  Q
    ||||||||||||| |  ||||||||||||||||||||||||||||||||| ||| | |||||||| | ||||||| ||||||| |||||||||||    
T  28020198 atgtttattttggaattttaaatctaagcctttcattttaatctaaagggctgatattgtattcttacattctcacataaagatgtcattctcac 28020104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 33045171 - 33045119
Alignment:
Q  85 ttaaatctaagcctttcattttaatctaaagggttgacaatgtattctcatat 137  Q
    ||||||||||||| ||||||||||||||||||||||| |||| ||||||||||    
T  33045171 ttaaatctaagccattcattttaatctaaagggttgataatggattctcatat 33045119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 3581 - 3658
Alignment:
Q  55 gatggtccatgttatgtttattttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattct 132  Q
    |||||||||  | |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||    
T  3581 gatggtccacataatgtttattttggtacattaaatctaagcctttcatttaaatctaaagggttgataatgcattct 3658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 55 - 162
Target Start/End: Original strand, 33181063 - 33181170
Alignment:
Q  55 gatggtccatgttatgtttattttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattctcatattctcaaataaagaagtc 154  Q
    |||||| || || |||||| | |||||||| |||||||||||| ||||||||||| |||| || ||| ||| |||||||| ||||||||||||  |||||    
T  33181063 gatggtgcacgtgatgtttttattggtacagtaaatctaagcccttcattttaatttaaaaggctgataatatattctcacattctcaaataagaaagtc 33181162  T
Q  155 attctcac 162  Q
    ||||||||    
T  33181163 attctcac 33181170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 55 - 162
Target Start/End: Complemental strand, 526902 - 526795
Alignment:
Q  55 gatggtccatgttatgtttattttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattctcatattctcaaataaagaagtc 154  Q
    ||||||| || | |||||| | ||||||||||||||||||| | | ||||||||||| || || | | |||||||||||| ||||||| |||| ||||||    
T  526902 gatggtctatatgatgtttttattggtacattaaatctaagtcctccattttaatctgaatggctaataatgtattctcacattctcatataaggaagtc 526803  T
Q  155 attctcac 162  Q
    ||||||||    
T  526802 attctcac 526795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 162
Target Start/End: Complemental strand, 33181017 - 33180913
Alignment:
Q  57 tggtccatgttatgtttattttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattctcatattctcaaataaagaagtcat 156  Q
    |||| ||||| |||||| || ||||||||||||| ||  || ||||||||||||||||  | ||| ||| |||||||| ||||||| ||||  |||||||    
T  33181017 tggtacatgtgatgttt-ttatggtacattaaatttagacccttcattttaatctaaaaagctgataatatattctcacattctcacataagaaagtcat 33180919  T
Q  157 tctcac 162  Q
    | ||||    
T  33180918 tatcac 33180913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 162
Target Start/End: Original strand, 42933479 - 42933564
Alignment:
Q  77 ttggtacattaaatctaagcctttcattttaatctaaagggttgacaatgtattctcatattctcaaataaagaagtcattctcac 162  Q
    |||||||||||||| |||||| ||||||||||||||||| | ||| ||| |||||||| ||||| | ||||  |||||||||||||    
T  42933479 ttggtacattaaatttaagcccttcattttaatctaaagagctgataatatattctcacattcttatataataaagtcattctcac 42933564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University