View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_low_1 (Length: 852)
Name: NF3234_low_1
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 766; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 766; E-Value: 0
Query Start/End: Original strand, 17 - 846
Target Start/End: Complemental strand, 22190652 - 22189823
Alignment:
| Q |
17 |
cagaacccaccaataacattaccattactattaatatcggatccagggagttgtttcaaaatattaaccccaaataaccgaaccatctgaaccggctcaa |
116 |
Q |
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||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22190652 |
cagaacccagcaataacattaccattactattaacatcggatccagggagttgtttcaaaatattaaccccaaataaccgaaccatctgaaccggctcaa |
22190553 |
T |
|
| Q |
117 |
caaccggtccaaccggaacaaacaacccaacctcattaacattcttccttgctttccaatcaataaacagctgcttctccggtccattagaccgttgaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22190552 |
caaccggtccaaccggaacaaacaacccaacctcattaacattcttccttgctttccaatcaataaacagctgcttctccggtccagtagaccgttgaaa |
22190453 |
T |
|
| Q |
217 |
acaaaccgaatcaccggcttttagattcttctccttaacgaaccggctccatccttttgttagaacgtagctttgactactgttccaataagagtatcta |
316 |
Q |
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|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
22190452 |
acaaaccgtatcaccggctttcagattcttctccttaacgaaccggctccatccttttgttagaacgtaactttgactactgttccaataagagtatcta |
22190353 |
T |
|
| Q |
317 |
aatctccacactttccctccaatgtcttcaaaattcaaaagcactcccttaccagctgccgatgcgcttccctggacgcaatcggctttctgtaatggaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22190352 |
aatctccacactttccctccaatgtcttcaaaattcaaaagcactcccttaccagctgccgatgcgcttccctggacgcaatcggctttctgtaatggaa |
22190253 |
T |
|
| Q |
417 |
agtgcttctcagcgtgctgttttggtataactaaccgatttaatttcccaacgtcgctcggggtaacaaccttttcgaacaaagcttcacgtgccttttt |
516 |
Q |
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||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
22190252 |
agtgcttctcagcatgctgtttcggtataactaaccgatttaacttcccaacgtcgctcggggtaacaaccttttcgaacagagcttcacgtgccttttt |
22190153 |
T |
|
| Q |
517 |
atcggtattgtaagccgagctggcaaagttaacagagccagaacagtcatggcttcgtctgctgacgaagccatgactgcgcttgctctgttcaagctcg |
616 |
Q |
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|||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| || ||| |
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| T |
22190152 |
atcggtattgtatgccgagctggcaaagttaacagagtcagaacagccatggcttcgtctgctgacgaagccatgactgcgcttgctctgttccagttcg |
22190053 |
T |
|
| Q |
617 |
tcattgtatgtatgttttcttaacatgtccacaatctctgacttggaatgcgagttgagaaactcgagttccatgtcatcgttgttgtggtcagagagtg |
716 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22190052 |
tcattgtatgtatgttttcttaacatgtccacaatctctgacttggaatgcgagttgagaaactcgagttccatgtcatcgttgttgtggtcagagagtg |
22189953 |
T |
|
| Q |
717 |
gtttaaagtttgttacagcatcttttccgcggaaacgttgtgcggcaacatcataagctttagcagcttcgtcttcttggttaaatgttccaagccacac |
816 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22189952 |
gtttaaagtttgttacagcatctttgccgcggaaacgttgtgcggcaacatcataagctttagcagcttcgtcttcttggttaaatgttccaagccacac |
22189853 |
T |
|
| Q |
817 |
acgctggtgcttttcgtaaatctgtgctcc |
846 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
22189852 |
acgctggtgcttttcgtaaatctgtgctcc |
22189823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 6e-30; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 220 - 359
Target Start/End: Original strand, 41952074 - 41952213
Alignment:
| Q |
220 |
aaccgaatcaccggcttttagattcttctccttaacgaaccggctccatccttttgttagaacgtagctttgactactgttccaataagagtatctaaat |
319 |
Q |
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||||| |||||||||| ||||||||||||||||||||||||||||||||||| || | ||| || || || ||||| ||||||||||| || | |||| |
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| T |
41952074 |
aaccgcatcaccggctcggagattcttctccttaacgaaccggctccatcctttggtcaaaacataactctggctactattccaataagaataacgaaat |
41952173 |
T |
|
| Q |
320 |
ctccacactttccctccaatgtcttcaaaattcaaaagca |
359 |
Q |
| |
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| ||||||||||||||||| |||||| ||||||||||||| |
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| T |
41952174 |
cgccacactttccctccaacgtcttcgaaattcaaaagca |
41952213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 263 - 312
Target Start/End: Complemental strand, 25691039 - 25690990
Alignment:
| Q |
263 |
ctccatccttttgttagaacgtagctttgactactgttccaataagagta |
312 |
Q |
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||||| |||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25691039 |
ctccaaccttttgttagaacatagctttgactactgttccaataagagta |
25690990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 141
Target Start/End: Original strand, 41951890 - 41951962
Alignment:
| Q |
69 |
gtttcaaaatattaaccccaaataaccgaaccatctgaaccggctcaacaaccggtccaaccggaacaaacaa |
141 |
Q |
| |
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||||||||| ||| |||||||| | |||||||||||||||||| ||||| ||||||| ||||| || |||||| |
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| T |
41951890 |
gtttcaaaagattcaccccaaaaagccgaaccatctgaaccggttcaactaccggtcgaaccgtaataaacaa |
41951962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 782 - 846
Target Start/End: Original strand, 41952648 - 41952712
Alignment:
| Q |
782 |
gcttcgtcttcttggttaaatgttccaagccacacacgctggtgcttttcgtaaatctgtgctcc |
846 |
Q |
| |
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||||||||||||| || || || |||||||||||||||||||| || ||||||||||||||||| |
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| T |
41952648 |
gcttcgtcttcttcattgaacgtaccaagccacacacgctggtgtttctcgtaaatctgtgctcc |
41952712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 245 - 326
Target Start/End: Original strand, 8775033 - 8775114
Alignment:
| Q |
245 |
ttctccttaacgaaccggctccatccttttgttagaacgtagctttgactactgttccaataagagtatctaaatctccaca |
326 |
Q |
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||||| ||||| || |||||||| |||||||| | ||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
8775033 |
ttctctttaacaaaacggctccaaccttttgtcataacatagctttggctactgttccaataagagtatctaaatctccaca |
8775114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 309
Target Start/End: Complemental strand, 48596138 - 48596071
Alignment:
| Q |
242 |
ttcttctccttaacgaaccggctccatccttttgttagaacgtagctttgactactgttccaataaga |
309 |
Q |
| |
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||||||||||||||||| |||||||| |||||||| | || || || || ||||||||||||||||| |
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| T |
48596138 |
ttcttctccttaacgaaacggctccaaccttttgtcatcacataactctggctactgttccaataaga |
48596071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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