View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3234_low_10 (Length: 424)
Name: NF3234_low_10
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_low_10 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 9 - 411
Target Start/End: Original strand, 19469720 - 19470122
Alignment:
| Q |
9 |
tgagatgaagatggacatgttttagcaacgacaacctgaaagagggatgactttgttcaaccagaagaagctgagggttatgctttgtacaagactatga |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
19469720 |
tgagatgaagatggacatgttttagcaacaacaacctggaagagggatgactttgttcaaccagaagaagctgagggttatgctttgtataagactatga |
19469819 |
T |
|
| Q |
109 |
ttttggtcaaggactgctgttttcgcacagtggagtttgagtgataatgaagggttagtgaagaagatcattagtgctggtgaagaacctggaacttatc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19469820 |
ttttggtcaaggactgctgttttcgcacagtggaatttcagtgataatgaagggttagtgaagaagatcattagtgctgctgaagaacctggaacttatc |
19469919 |
T |
|
| Q |
209 |
tagggaatattattagatgttttcacgttaagtaaaacttttaataagtgtgatttcctcttttaccaagagacaatgaaatttggtggcccatgagttg |
308 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19469920 |
tagagaatattattagatgttttcaggttaagtaaaacttttaacaagtgtgctttcctcttttaccaagagacaatgaaatttggtggcccatgagttg |
19470019 |
T |
|
| Q |
309 |
gctcatttggctcttcaggttcctgataggatttggttggaggaagtacttgaatccattaatttgtattgtgacaattcctttatttaatctgtagttt |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19470020 |
gctcatttggctcttcaggttcctgataggatttggttagaggaagtacttgaatccattaatttgtattgtgacaattcctttatttaatctgtagttt |
19470119 |
T |
|
| Q |
409 |
ttg |
411 |
Q |
| |
|
||| |
|
|
| T |
19470120 |
ttg |
19470122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 252
Target Start/End: Complemental strand, 47865596 - 47865355
Alignment:
| Q |
11 |
agatgaagatggacatgttttagcaacgacaacctgaaagagggatgactttgttcaaccagaagaagctgagggttatgctttgtacaagactatgatt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47865596 |
agatgaagatggacatgttttagcaacgacaacctgaaagagggatgactttgttcaaccagaagaagctgagggttatgctttgtacaagactatgatt |
47865497 |
T |
|
| Q |
111 |
ttggtcaaggactgctgttttcgcacagtggagtttgagtgataatgaagggttagtgaagaagatcattagtgctggtgaagaacctggaacttatcta |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47865496 |
ttggtcaaggactgctgttttcgcacagtggagtttgagtgataatgaagggttagtgaagaagatcattagtgctggtgaagaacctggaacttatcta |
47865397 |
T |
|
| Q |
211 |
gggaatattattagatgttttcacgttaagtaaaacttttaa |
252 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47865396 |
gggaatattattagatgttttcacgttaagtaaaacttttaa |
47865355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 244 - 411
Target Start/End: Complemental strand, 47864488 - 47864321
Alignment:
| Q |
244 |
aacttttaataagtgtgatttcctcttttaccaagagacaatgaaatttggtggcccatgagttggctcatttggctcttcaggttcctgataggatttg |
343 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47864488 |
aacttttaataagtgtgatttcctcttttaccaagagacaatgaaatttggtggcccatgagttggctcatttggctcttcaggttcctgataggatttg |
47864389 |
T |
|
| Q |
344 |
gttggaggaagtacttgaatccattaatttgtattgtgacaattcctttatttaatctgtagtttttg |
411 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47864388 |
gttggaggaagtgcttgaatccattaatttgtattgtgacaattcctttatttaatctgtagtttttg |
47864321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University