View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_low_12 (Length: 422)
Name: NF3234_low_12
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 19 - 416
Target Start/End: Complemental strand, 44546649 - 44546252
Alignment:
| Q |
19 |
tctttccaccaagtttaccctttttctttgttgcacatgatgattcatnnnnnnnatattttacatacacatcatcctcaactatctcaagtacattaga |
118 |
Q |
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| T |
44546649 |
tctttccaccaagtttatcctttttctttgttgcacatgatgattcatcccccccatattttacatacacatcatcctcaactatctcaagtacattaga |
44546550 |
T |
|
| Q |
119 |
ttttccatgacgcttcatatgcttcattaaaaacctatgtcgttcattttcttcttcattgctgttgctgtcgttgttttgttcctgaagatgaagcagc |
218 |
Q |
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| T |
44546549 |
ttttccatgacgcttcatatgcttcaataaaaacctatgtcgttcattttcttcttcattgctgttgctgtcgttgttttgttcctgaagatgaagcagc |
44546450 |
T |
|
| Q |
219 |
tgagattgtataatactggatggaccatctgtgatctttatcaagtctgagtcggcttttggatcgttaatgtaaaatttgtgaa---gaaggttgtaga |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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| T |
44546449 |
tgagattgtataatactggatggaccatctgtgatctttatcaagtctgagtcggcttttggatcgttaatgtaaaatttgtgaagaagaaggtcgtaga |
44546350 |
T |
|
| Q |
316 |
gctttttcttttgagtattagggtacctaatcttgtgaagaagaaggaaatcatataaatctttttcatgatcccatgttctctttctagggttcatctc |
415 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
44546349 |
gctttttcttttgagtattagggtccctaatcttgt---gaagaaggaaatcatataaatctttttcatgatcccatgttctctttctagggttcttctc |
44546253 |
T |
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