View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_low_15 (Length: 399)
Name: NF3234_low_15
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 226 - 348
Target Start/End: Original strand, 30275162 - 30275284
Alignment:
| Q |
226 |
ctcttcaataaacatcagaaaaacatcaagttcatgatgcttaagaccaactgagtggttctccaccaattgtgaatacatgataaagatatctttgacc |
325 |
Q |
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| T |
30275162 |
ctcttcaataaacatcagaaaaacatcgagttcatgatgcttaaaaccaactgagtggttctccaccaattgtgaatccatgctgaagatatctttgacc |
30275261 |
T |
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| Q |
326 |
atagtagagagaaactgcaccaa |
348 |
Q |
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| T |
30275262 |
atggtagagagaaactgcaccaa |
30275284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 349 - 382
Target Start/End: Original strand, 30275321 - 30275354
Alignment:
| Q |
349 |
aagtgactcaggtaacttgaatctagaactatct |
382 |
Q |
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| T |
30275321 |
aagtgactcaggtaacttgattctagaactatct |
30275354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 211
Target Start/End: Complemental strand, 37751914 - 37751787
Alignment:
| Q |
88 |
cacgtaaaaatattatcggttagccacatgaaactacatttaagattttcctattctctgt------agattaa-tacatgaacatgtcacagtagtaga |
180 |
Q |
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| T |
37751914 |
cacgtagaaatattaatggttagccacataaaactacacttaagatttccctaatctccatctcgatagagtaaatacatgaacatgtcacaggag---a |
37751818 |
T |
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| Q |
181 |
aatagaaaataaaagcactactgtcataacc |
211 |
Q |
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| T |
37751817 |
aatagaaaataaaagcacaactgtcataacc |
37751787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 211
Target Start/End: Original strand, 7779491 - 7779525
Alignment:
| Q |
177 |
tagaaatagaaaataaaagcactactgtcataacc |
211 |
Q |
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| T |
7779491 |
tagaaatagaaaataaaagcactactgtcataacc |
7779525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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