View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_low_16 (Length: 395)
Name: NF3234_low_16
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 12 - 321
Target Start/End: Original strand, 43669235 - 43669544
Alignment:
| Q |
12 |
acagaagacatttgtattcaagttggtccaatatatcgatccgtcggcataaaaaaccgctttactatcttcacatttgtgcaagtggttagatcacaat |
111 |
Q |
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| T |
43669235 |
acagaagacgtttgtattcaagttggtccagtatatcgatccgtcggcataaaaaactgctttactatcttcacatttgtgcaagtggttagatcacaat |
43669334 |
T |
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| Q |
112 |
cccttggacactatatgaatagtataaagcaacattgttcattaatggaaatttcttgatcaaattggcacaatgtaaaagccaaatttgatctcaatct |
211 |
Q |
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| T |
43669335 |
cccttggacactatatgaatagtataaagcaacattgttcattaatggaaatttcttgatcaaattggcacaatgtaaaagccaaatttgatctcaatct |
43669434 |
T |
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| Q |
212 |
gattctgtactttttggctttaacacagaagttgttcaaggcggaaagtactttcgtagattagatatattatataaatttatcaatatacgtggagacc |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43669435 |
gattctgtactttttggctttaacacagaagttgttcaacgcggaaagtactttcgtagattagatatattatataaatttatcaatatacgtggagacc |
43669534 |
T |
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| Q |
312 |
agtcgagggg |
321 |
Q |
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|||||||||| |
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| T |
43669535 |
agtcgagggg |
43669544 |
T |
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