View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_low_17 (Length: 394)
Name: NF3234_low_17
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 6 - 377
Target Start/End: Original strand, 54396423 - 54396794
Alignment:
| Q |
6 |
aggagcagagatatcctttgagattttcaaaatggtgtagttctgcaaacgtgcacctgatgttgtgggatagctagttgtgtggatgttatatctggcc |
105 |
Q |
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| T |
54396423 |
aggagcatagatatcctttgagattttcaaaatggtgtagttctgcaaacgtgcacctgatgttgtgggatagctagttgtgtgaatgttatatctggcc |
54396522 |
T |
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| Q |
106 |
tcagtaccaagaacactatgaacaaattcaagcatggactctaatgaagtaggacaagctttggtctccccttttgtgggttcaaattcacattgatcaa |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54396523 |
tcagtaccaagaacactatgaacaaattcaagcatggactctaatgaagtaggacaagctttggtctccccttttgtgggttcaaattcacattgatcaa |
54396622 |
T |
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| Q |
206 |
ttatgtctttcatgtcttcaccttggggggaatcttttgtgagagagaatatttgaagaaggcttggtagttgtgacttggagaaaggaatgtagtcagc |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54396623 |
ttatgtctttcatgtcttcaccttggggggaatcttttgtgagagagaagagttgaagaaggcttggtagttgtgacttggagaaaggaatgtagtcagc |
54396722 |
T |
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| Q |
306 |
tacnnnnnnnggcaagaagttagcatattctctgataggaaattgcagcgtcattacgttccctacataaag |
377 |
Q |
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||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
54396723 |
tactttttttggcaagaagttagcatattctctgacaggaaattgcagcgtcattacgttccctacataaag |
54396794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 6 - 377
Target Start/End: Original strand, 54381539 - 54381910
Alignment:
| Q |
6 |
aggagcagagatatcctttgagattttcaaaatggtgtagttctgcaaacgtgcacctgatgttgtgggatagctagttgtgtggatgttatatctggcc |
105 |
Q |
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||||||| |||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
54381539 |
aggagcatagatatcctttgagatttccaaaatggtgtagttttgcaaacgcacacctgatgttgtcggatagctagttgtgtgaatgttatatctggcc |
54381638 |
T |
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| Q |
106 |
tcagtaccaagaacactatgaacaaattcaagcatggactctaatgaagtaggacaagctttggtctccccttttgtgggttcaaattcacattgatcaa |
205 |
Q |
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|| | ||| ||||| || |||||||||||||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||| ||||||||||||| |
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| T |
54381639 |
tcggcaccgagaacgctgtgaacaaattcaagcatggactctaaagaagtgggacaggccttggtctccccttttgtgggttcaaactcacattgatcaa |
54381738 |
T |
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| Q |
206 |
ttatgtctttcatgtcttcaccttggggggaatcttttgtgagagagaatatttgaagaaggcttggtagttgtgacttggagaaaggaatgtagtcagc |
305 |
Q |
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||||||||||||| |||||||||||||| || ||||||||||| ||||||| |||||||||||| |||||||| |||||||||| ||||||||||||||| |
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| T |
54381739 |
ttatgtctttcatatcttcaccttggggagagtcttttgtgagtgagaatagttgaagaaggctaggtagttgcgacttggagagaggaatgtagtcagc |
54381838 |
T |
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| Q |
306 |
tacnnnnnnnggcaagaagttagcatattctctgataggaaattgcagcgtcattacgttccctacataaag |
377 |
Q |
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||| ||||||||| ||||||||||||||||||||||||||| |||||||| |||||||| ||||| |
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| T |
54381839 |
tacttttcttggcaagaagcgagcatattctctgataggaaattgcagggtcattacattccctacgtaaag |
54381910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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