View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_low_2 (Length: 568)
Name: NF3234_low_2
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 53 - 547
Target Start/End: Complemental strand, 42019519 - 42019006
Alignment:
| Q |
53 |
ggtcacatgtctcatcttctctaacattgagttgtttgtcaccacctaatcatgcaaggttccttcctctgtattattttatgaataaggttcttccttc |
152 |
Q |
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| T |
42019519 |
ggtcacatgtctcatcttctctaacattgggttgtttgtcaccacctaatcatgcaaagttccttcctctgtattattttatgaataaggttcttccttc |
42019420 |
T |
|
| Q |
153 |
tatgtactatgggtcat---tgagaatcaaatgcttccatttattgattgttgtgaccagttaagttgctgcagtcttttaccacctggaacaaccatat |
249 |
Q |
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| T |
42019419 |
tatgttctatgggtgataattgagaatcaaatgcttccatttattgattgttgtgaccagttaagttgctgcagtcttttaccacttggaacaaccatat |
42019320 |
T |
|
| Q |
250 |
gatggtacttggtatcaaagtgcttgtttgactgagttgcattttctgttttgaaataatatactgtaagaatgttcaacctatcttttataagacaaat |
349 |
Q |
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| T |
42019319 |
gatggtacttggtatcaaagtgcttgtt--aatgtgttgcattttctgttttgaaataatatactgtaagaatgttcaacctatcttttataagacaaat |
42019222 |
T |
|
| Q |
350 |
ctttttaagtaaattaaaaaactatatgccaatatcaattgaaaaacatct-------tttcaaaaattgcttgataaacttattttgacatgttttaaa |
442 |
Q |
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| T |
42019221 |
ctttttaagtaaattaaaaaactatatgccaatattaattgaaaaacatctttaaaaattttaaaaattgcttgataaacttattttggcatgttttaaa |
42019122 |
T |
|
| Q |
443 |
gggatgtttgatgataacaatggt-nnnnnnntgacttggacaat----------gattgcatgtgggaatatgatggtgaaagttttctgggtgacgat |
531 |
Q |
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| T |
42019121 |
gggatgtttgatgataacaatggtaaaaaaaatgacttggacaatgattgtgaaggattgcatgtgggaatatgatgctgaaagttttctgggtgacgat |
42019022 |
T |
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| Q |
532 |
atgggggagaattatt |
547 |
Q |
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| T |
42019021 |
atgggggagaattatt |
42019006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 122 - 547
Target Start/End: Complemental strand, 1252661 - 1252233
Alignment:
| Q |
122 |
tgtattattttatgaataa-ggttcttccttctatgtactatgggtcat---tgagaatcaaatgcttccatttattgattgttgtgaccagttaagttg |
217 |
Q |
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||||||||||||||||||| ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1252661 |
tgtattattttatgaataaaggttcttccttctatgttctatgggtgataattgagaatcaaatgcttccatttattgattgttgtgaccagttaagttg |
1252562 |
T |
|
| Q |
218 |
ctgcagtcttttaccacctggaacaaccatatgatggtacttggtatcaaagtgcttgtttgactgagttgcattttctgttttgaaataatatactgta |
317 |
Q |
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| T |
1252561 |
ctgcagtcttttaccacctggaacaaccatatgatggtacttggtatcaaagtgcttgtttgactgtgttgcattttctgttttgaaataatatactgta |
1252462 |
T |
|
| Q |
318 |
agaatgttcaacctatcttttataagacaaatctttttaagtaaattaaaaaactatatgccaatatcaattgaaaaacatcttttcaaaaattgcttga |
417 |
Q |
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| T |
1252461 |
agaatgttcaacctatcttttacaagacaaatc--ttgaagtaaattaaaaaactatatgccaatattaattgaaaaacatctttttaaaaattgcttga |
1252364 |
T |
|
| Q |
418 |
taaacttattttgacatgttttaaagggatgtttgatgataacaatggt-nnnnnnntgacttggacaatgattgcatgtgggaatatgatggtgaaagt |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1252363 |
taaacttattttgacatgttttaaagggatgtttgatgataacaatggtaaaaaaaatgacttggacaatgattgcatgtgggaatatgatggtgaaagt |
1252264 |
T |
|
| Q |
517 |
tttctgggtgacgatatgggggagaattatt |
547 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
1252263 |
tttctgggtgacgatatgggggagaattatt |
1252233 |
T |
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