View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3234_low_20 (Length: 373)

Name: NF3234_low_20
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3234_low_20
NF3234_low_20
[»] chr3 (17 HSPs)
chr3 (12-216)||(17003838-17004042)
chr3 (216-355)||(44380248-44380388)
chr3 (217-355)||(47426345-47426484)
chr3 (226-354)||(33509684-33509813)
chr3 (217-322)||(50934495-50934600)
chr3 (222-346)||(47186175-47186301)
chr3 (222-346)||(31187115-31187241)
chr3 (217-355)||(35094541-35094682)
chr3 (222-346)||(42664673-42664799)
chr3 (224-355)||(39498707-39498838)
chr3 (220-324)||(37742726-37742827)
chr3 (217-290)||(32319468-32319541)
chr3 (217-288)||(10179868-10179939)
chr3 (222-324)||(34029360-34029462)
chr3 (217-352)||(17466268-17466404)
chr3 (217-288)||(10018671-10018742)
chr3 (217-288)||(10123211-10123282)
[»] chr5 (16 HSPs)
chr5 (219-355)||(19357299-19357435)
chr5 (217-355)||(39570080-39570219)
chr5 (217-355)||(11607571-11607710)
chr5 (227-355)||(33858575-33858704)
chr5 (217-355)||(1826254-1826393)
chr5 (222-346)||(38010659-38010785)
chr5 (212-324)||(9827778-9827890)
chr5 (217-346)||(13015376-13015507)
chr5 (222-346)||(29989962-29990088)
chr5 (222-346)||(13086753-13086879)
chr5 (238-355)||(33271630-33271748)
chr5 (222-346)||(13478090-13478216)
chr5 (223-346)||(13421055-13421180)
chr5 (246-338)||(10292897-10292989)
chr5 (277-324)||(42148201-42148248)
chr5 (270-324)||(37881189-37881243)
[»] chr2 (12 HSPs)
chr2 (217-355)||(34392118-34392257)
chr2 (216-355)||(7381686-7381825)
chr2 (215-334)||(21603952-21604072)
chr2 (236-355)||(23863840-23863958)
chr2 (217-324)||(37357990-37358097)
chr2 (250-355)||(4779613-4779719)
chr2 (222-355)||(4775634-4775769)
chr2 (253-324)||(41095855-41095926)
chr2 (227-337)||(14565908-14566019)
chr2 (273-355)||(25275659-25275741)
chr2 (287-325)||(34903967-34904005)
chr2 (241-341)||(10163501-10163603)
[»] chr1 (14 HSPs)
chr1 (216-355)||(32676130-32676270)
chr1 (217-355)||(29119361-29119500)
chr1 (222-354)||(2569037-2569169)
chr1 (222-346)||(8809685-8809811)
chr1 (217-315)||(25161304-25161402)
chr1 (217-355)||(8462124-8462262)
chr1 (217-355)||(46435502-46435629)
chr1 (219-303)||(7214501-7214585)
chr1 (222-346)||(35998252-35998378)
chr1 (251-314)||(3688917-3688980)
chr1 (229-346)||(35534413-35534528)
chr1 (264-327)||(8555471-8555534)
chr1 (223-320)||(6223052-6223149)
chr1 (223-271)||(16679821-16679868)
[»] chr4 (19 HSPs)
chr4 (217-355)||(33249411-33249550)
chr4 (217-355)||(12473699-12473838)
chr4 (217-355)||(12528108-12528247)
chr4 (219-355)||(22343334-22343471)
chr4 (215-355)||(35869608-35869749)
chr4 (217-355)||(21260789-21260928)
chr4 (217-355)||(51811909-51812048)
chr4 (222-346)||(52012778-52012904)
chr4 (223-316)||(52910126-52910219)
chr4 (217-355)||(55590477-55590605)
chr4 (223-319)||(49999662-49999758)
chr4 (222-346)||(9799408-9799534)
chr4 (217-308)||(34829168-34829259)
chr4 (253-312)||(1796163-1796222)
chr4 (246-315)||(46719954-46720023)
chr4 (217-338)||(33174513-33174630)
chr4 (226-281)||(49998486-49998541)
chr4 (222-346)||(47943158-47943285)
chr4 (245-281)||(35781027-35781063)
[»] chr7 (10 HSPs)
chr7 (217-355)||(35341531-35341670)
chr7 (217-324)||(48250149-48250256)
chr7 (242-354)||(32694608-32694721)
chr7 (218-355)||(48072385-48072521)
chr7 (216-320)||(40893114-40893219)
chr7 (226-315)||(31306951-31307041)
chr7 (270-329)||(40856479-40856538)
chr7 (217-286)||(40856387-40856456)
chr7 (319-355)||(40856943-40856979)
chr7 (245-281)||(48072505-48072541)
[»] scaffold0032 (1 HSPs)
scaffold0032 (217-355)||(34189-34327)
[»] chr8 (8 HSPs)
chr8 (217-355)||(41179600-41179739)
chr8 (229-354)||(18168392-18168519)
chr8 (229-354)||(18631949-18632076)
chr8 (217-355)||(24337867-24338006)
chr8 (230-354)||(4708345-4708470)
chr8 (218-352)||(11254068-11254202)
chr8 (222-324)||(1514803-1514905)
chr8 (223-346)||(32825881-32826005)
[»] chr6 (6 HSPs)
chr6 (217-353)||(1211883-1212020)
chr6 (217-355)||(5403913-5404052)
chr6 (222-346)||(34245567-34245693)
chr6 (216-355)||(32644874-32645013)
chr6 (223-346)||(11113557-11113677)
chr6 (222-287)||(11753167-11753232)
[»] scaffold0229 (1 HSPs)
scaffold0229 (217-324)||(13075-13182)
[»] scaffold0519 (1 HSPs)
scaffold0519 (218-352)||(11191-11325)
[»] scaffold0263 (2 HSPs)
scaffold0263 (223-327)||(23165-23263)
scaffold0263 (223-271)||(23094-23142)
[»] scaffold0041 (1 HSPs)
scaffold0041 (216-320)||(73065-73170)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 9e-86; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 12 - 216
Target Start/End: Complemental strand, 17004042 - 17003838
Alignment:
Q  12 gaagaatatggtgtgaagaaagcctgtgatgaacttgggattacattgattgcatattcaccaatagctcaaggtgaaatcctttttactatccaaaacc 111  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17004042 gaagaaaatggtgtgaagaaagcctgtgatgaacttgggattacattgattgcatattcaccaatagctcaaggtgaaatcctttttactattcaaaacc 17003943  T
Q  112 acaaattaaaagaataatactacctctatccatttttcttagtacatacccttaaggttaataactggggcgtccggtgttcaaaactcggaccctgcat 211  Q
    ||| ||||||||||||||||||||||||||| ||||| |||||| ||||| ||||||||||||| ||||| |||||||||||||| |||||| |||||||    
T  17003942 acatattaaaagaataatactacctctatccctttttattagtatatacctttaaggttaataagtggggtgtccggtgttcaaacctcggatcctgcat 17003843  T
Q  212 atatt 216  Q
    |||||    
T  17003842 atatt 17003838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 216 - 355
Target Start/End: Original strand, 44380248 - 44380388
Alignment:
Q  216 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgat 315  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||| ||||||| |||||| |||||| |||| |||||||||||||||||||||||||    
T  44380248 tggattccacttgtgtaccattaaggtaccaatggtatatactattgaccaattatagtgtgtcacctatcaatattactttataaatgctttatttgat 44380347  T
Q  316 ata-ttttttaaaggatgtgccacatgacacaatctaattg 355  Q
    ||| ||||||||||| |||||||| ||||||| ||||||||    
T  44380348 atacttttttaaagggtgtgccacgtgacacattctaattg 44380388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 217 - 355
Target Start/End: Original strand, 47426345 - 47426484
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    |||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||    
T  47426345 ggataccacttgtgtaccattaaggtaccaatagtatataccattggccaattagagtgtgtcacctatcaatgttactttatagatgctttatttgata 47426444  T
Q  317 ta-ttttttaaaggatgtgccacatgacacaatctaattg 355  Q
    || ||||||||||| |||||||||||  ||| ||||||||    
T  47426445 tatttttttaaagggtgtgccacatggtacattctaattg 47426484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 226 - 354
Target Start/End: Original strand, 33509684 - 33509813
Alignment:
Q  226 ttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata-tttttt 324  Q
    ||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||| || ||||||    
T  33509684 ttgtgtaccattaaggtactaatagtatatatcattgaccaattagagtgtgccacctaccaatattactttatagatgctttatttgatgtattttttt 33509783  T
Q  325 aaaggatgtgccacatgacacaatctaatt 354  Q
    ||||||||||||||||| |||| |||||||    
T  33509784 aaaggatgtgccacatggcacattctaatt 33509813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 217 - 322
Target Start/End: Original strand, 50934495 - 50934600
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    ||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  50934495 ggatttcacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacttaccaatgttactttataaatgcattatttgata 50934594  T
Q  317 tatttt 322  Q
    ||||||    
T  50934595 tatttt 50934600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 222 - 346
Target Start/End: Original strand, 47186175 - 47186301
Alignment:
Q  222 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--t 319  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||  |    
T  47186175 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgt 47186274  T
Q  320 tttttaaaggatgtgccacatgacaca 346  Q
    |||||||||  ||||||||||| ||||    
T  47186275 tttttaaagtgtgtgccacatggcaca 47186301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 222 - 346
Target Start/End: Complemental strand, 31187241 - 31187115
Alignment:
Q  222 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgat--atat 319  Q
    |||||| |||||||||||||||| |||| |||||| ||||| ||||| |||||||||||| |||||||||||||||||||||| ||||||||||  ||||    
T  31187241 ccacttatgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatatatat 31187142  T
Q  320 tttttaaaggatgtgccacatgacaca 346  Q
    |||||||||  ||||||||||| ||||    
T  31187141 tttttaaagtgtgtgccacatgtcaca 31187115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 217 - 355
Target Start/End: Original strand, 35094541 - 35094682
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaatta--gagtgtgccacctaccaatgttactttataaatgctttatttga 314  Q
    |||||||||||  |||||||||| |||| | ||||||||||||||| | |||||  |||| ||||||||||||||||||||||||||||  |||||||||    
T  35094541 ggattccacttcagtaccattaaagtaccagtggtatataccattgactaattatagagtatgccacctaccaatgttactttataaatattttatttga 35094640  T
Q  315 tata-ttttttaaaggatgtgccacatgacacaatctaattg 355  Q
    |||| |||||||||||||||| ||| ||||||| ||||||||    
T  35094641 tatatttttttaaaggatgtgtcacgtgacacattctaattg 35094682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 222 - 346
Target Start/End: Original strand, 42664673 - 42664799
Alignment:
Q  222 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--t 319  Q
    ||||||||||||||||||||||| || | |||||| ||||| ||||| |||||||||||| ||||||||||| |||||||||| |||||||||||||  |    
T  42664673 ccacttgtgtaccattaaggtaccaaagttatataacattgaccaataagagtgtgccacataccaatgttattttataaatgttttatttgatatatgt 42664772  T
Q  320 tttttaaaggatgtgccacatgacaca 346  Q
    |||||||||  ||||||||||| ||||    
T  42664773 tttttaaagtgtgtgccacatgtcaca 42664799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 224 - 355
Target Start/End: Complemental strand, 39498838 - 39498707
Alignment:
Q  224 acttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatattttt 323  Q
    |||||||||||||||| |||| |||| ||||||  ||||| |||||| |||||| |||||| | |||||| |||||||||  ||||||| ||||| ||||    
T  39498838 acttgtgtaccattaaagtaccaatgatatatattattggtcaattaaagtgtgtcacctatcgatgttattttataaatattttatttaatataatttt 39498739  T
Q  324 taaaggatgtgccacatgacacaatctaattg 355  Q
    ||||||||||||||| ||||||| ||||||||    
T  39498738 taaaggatgtgccacgtgacacattctaattg 39498707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 220 - 324
Target Start/End: Original strand, 37742726 - 37742827
Alignment:
Q  220 ttccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatat 319  Q
    |||||||||||||   ||||||||| ||||||||||| |||||| |||||||||| ||||||||||||||||||| |||  |||||||||||||||||||    
T  37742726 ttccacttgtgta---ttaaggtaccaatggtatatatcattggtcaattagagtatgccacctaccaatgttacattaccaatgctttatttgatatat 37742822  T
Q  320 ttttt 324  Q
    |||||    
T  37742823 ttttt 37742827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 290
Target Start/End: Complemental strand, 32319541 - 32319468
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatg 290  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  32319541 ggattctacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctacaaatg 32319468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 10179939 - 10179868
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaa 288  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||    
T  10179939 ggattccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgccacctaccaa 10179868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 222 - 324
Target Start/End: Complemental strand, 34029462 - 34029360
Alignment:
Q  222 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatattt 321  Q
    |||||||| |||||||||||||| |||| |||||| |||||  |||| |||||||||||| ||| |||||||||||||||||| |||||||||||||| |    
T  34029462 ccacttgtttaccattaaggtaccaatgttatataacattgatcaataagagtgtgccacatactaatgttactttataaatgttttatttgatatatgt 34029363  T
Q  322 ttt 324  Q
    |||    
T  34029362 ttt 34029360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 217 - 352
Target Start/End: Original strand, 17466268 - 17466404
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    |||||||| |||||||| ||| |  ||  ||||||||||| |||||| ||||||||||||| |||||| ||||||||||||||||||| |||| ||||||    
T  17466268 ggattccatttgtgtacgattcaaatatcaatggtatatatcattggtcaattagagtgtgtcacctatcaatgttactttataaatgatttagttgata 17466367  T
Q  317 ta-ttttttaaaggatgtgccacatgacacaatctaa 352  Q
    || ||||||||||| | |||||| |  ||||||||||    
T  17466368 tatttttttaaagggtatgccacgtaccacaatctaa 17466404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 10018742 - 10018671
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaa 288  Q
    ||||||||||||||||||||||| |||| |||| ||||||||||||| |||| | |||||||||||||||||    
T  10018742 ggattccacttgtgtaccattaaagtaccaatgttatataccattggtcaataaaagtgtgccacctaccaa 10018671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 10123282 - 10123211
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaa 288  Q
    ||||||||||||||||||||||| |||  |||| |||||| || ||| |||| | |||||||||||||||||    
T  10123282 ggattccacttgtgtaccattaaagtatcaatgttatatatcaatggtcaataaaagtgtgccacctaccaa 10123211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 219 - 355
Target Start/End: Complemental strand, 19357435 - 19357299
Alignment:
Q  219 attccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata 318  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19357435 attccacttgtgtaccattagggtaccaatggtatataccattggccaattagagtgtgccacctaccaatattactttataaatgctttatttgatata 19357336  T
Q  319 ttttttaaaggatgtgccacatgacacaatctaattg 355  Q
    ||||||||||||||| |||| ||||||| ||||||||    
T  19357335 ttttttaaaggatgtcccacgtgacacattctaattg 19357299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 217 - 355
Target Start/End: Complemental strand, 39570219 - 39570080
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    |||||||||||||||| |||||| |||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  39570219 ggattccacttgtgtatcattaaagtatcaatggtatataccattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgata 39570120  T
Q  317 ta-ttttttaaaggatgtgccacatgacacaatctaattg 355  Q
    || ||||||||||| |||||||| ||||| | ||||||||    
T  39570119 tacttttttaaagggtgtgccacctgacatattctaattg 39570080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 217 - 355
Target Start/End: Complemental strand, 11607710 - 11607571
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||| |||||||||||    
T  11607710 ggattccacttgtataccattaaggtaccaatggtatataccattgaccaattatagtgtgccacctaccaatattactttataaatgttttatttgata 11607611  T
Q  317 ta-ttttttaaaggatgtgccacatgacacaatctaattg 355  Q
    || ||||||||||| ||||||||  | |||| ||||||||    
T  11607610 tacttttttaaagggtgtgccacgggccacattctaattg 11607571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 227 - 355
Target Start/End: Complemental strand, 33858704 - 33858575
Alignment:
Q  227 tgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata-tttttta 325  Q
    |||||||||||||||||| ||| ||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||    
T  33858704 tgtgtaccattaaggtaccaatagtatatatcattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgatatactttttta 33858605  T
Q  326 aaggatgtgccacatgacacaatctaattg 355  Q
    |||| |||||||| ||||||| ||||||||    
T  33858604 aagggtgtgccacgtgacacattctaattg 33858575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 217 - 355
Target Start/End: Original strand, 1826254 - 1826393
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    |||| |||||||||||||||||| |||| |||||||||||||||||| ||||||||||||| ||||||||||| ||||||| || |||||||||||||||    
T  1826254 ggataccacttgtgtaccattaaagtaccaatggtatataccattggtcaattagagtgtgtcacctaccaatattactttgtagatgctttatttgata 1826353  T
Q  317 ta-ttttttaaaggatgtgccacatgacacaatctaattg 355  Q
    || |||||||||| |||||||||||| |||| | ||||||    
T  1826354 tatttttttaaagtatgtgccacatggcacattttaattg 1826393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 222 - 346
Target Start/End: Complemental strand, 38010785 - 38010659
Alignment:
Q  222 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--t 319  Q
    ||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||  |    
T  38010785 ccacttgtgtaccattaaggtaccaatgttatataacattggccaataagagtgtgccacataccaatgttactttataaatactttatttgatatatgt 38010686  T
Q  320 tttttaaaggatgtgccacatgacaca 346  Q
    |||||||||  ||||||||||| ||||    
T  38010685 tttttaaagtgtgtgccacatggcaca 38010659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 212 - 324
Target Start/End: Original strand, 9827778 - 9827890
Alignment:
Q  212 atattggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatt 311  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| || | |||||||||||| |||||||||||| |||||||||||||  ||||||    
T  9827778 atattggattccacttgtgtaccattaaggtaccaatggtatatacctttagtcaattagagtgtaccacctaccaatattactttataaatattttatt 9827877  T
Q  312 tgatatatttttt 324  Q
    |||||||| ||||    
T  9827878 tgatatatctttt 9827890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 217 - 346
Target Start/End: Original strand, 13015376 - 13015507
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttg--a 314  Q
    |||| ||||||||||||||||||||||| |||| |||||| ||||| ||||| |||||||||||| |||||||||||||||||||||  ||||||||  |    
T  13015376 ggataccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatattttatttgata 13015475  T
Q  315 tatattttttaaaggatgtgccacatgacaca 346  Q
    |||||||||||||| |||||||||||| ||||    
T  13015476 tatattttttaaagtatgtgccacatgtcaca 13015507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 222 - 346
Target Start/End: Original strand, 29989962 - 29990088
Alignment:
Q  222 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--t 319  Q
    ||||||||||||||||||||||  |||| |||||| ||||| ||||| |||||||||||| |||||||||||||||||||||| |||||||||||||  |    
T  29989962 ccacttgtgtaccattaaggtatcaatgttatataacattgaccaataagagtgtgccacataccaatgttactttataaatgttttatttgatatatgt 29990061  T
Q  320 tttttaaaggatgtgccacatgacaca 346  Q
    |||||||||  ||||||||||| ||||    
T  29990062 tttttaaagtgtgtgccacatgtcaca 29990088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 222 - 346
Target Start/End: Original strand, 13086753 - 13086879
Alignment:
Q  222 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata--tat 319  Q
    ||||||||||||||||||||||| |||| |||||| ||||| ||||| |||||||||||| ||||||||||| |||||||||  |||||||||||  |||    
T  13086753 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacataccaatgttattttataaatattttatttgatatgtat 13086852  T
Q  320 tttttaaaggatgtgccacatgacaca 346  Q
    |||||||||  ||||||||||| ||||    
T  13086853 tttttaaagtgtgtgccacatgtcaca 13086879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 238 - 355
Target Start/End: Original strand, 33271630 - 33271748
Alignment:
Q  238 aaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata-ttttttaaaggatgtgcc 336  Q
    ||||||| |||| |||||| |||||||||||||||||||| || ||| ||||||||||| ||||||||||||||||||||| |||||||||||||| |||    
T  33271630 aaggtaccaatgatatatatcattggccaattagagtgtgtcatctatcaatgttacttgataaatgctttatttgatatatttttttaaaggatgcgcc 33271729  T
Q  337 acatgacacaatctaattg 355  Q
    || || |||| ||||||||    
T  33271730 acgtggcacattctaattg 33271748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 222 - 346
Target Start/End: Complemental strand, 13478216 - 13478090
Alignment:
Q  222 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--t 319  Q
    |||||||||||||||||||| || |||| |||||| ||||| ||||| |||||||||||| ||||| |||||||||||||||  |||||||||||||  |    
T  13478216 ccacttgtgtaccattaaggaaccaatgttatataacattgaccaataagagtgtgccacataccattgttactttataaatattttatttgatatatgt 13478117  T
Q  320 tttttaaaggatgtgccacatgacaca 346  Q
    |||||||||  ||||||||||| ||||    
T  13478116 tttttaaagtgtgtgccacatgtcaca 13478090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 223 - 346
Target Start/End: Complemental strand, 13421180 - 13421055
Alignment:
Q  223 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--tt 320  Q
    |||||||||||||||||||||  |||| |||||| |||||  |||| |||||||  ||  || ||||||||||||||||||||||||||| |||||  ||    
T  13421180 cacttgtgtaccattaaggtatcaatgttatataacattgatcaataagagtgtatcaaatatcaatgttactttataaatgctttatttaatatatgtt 13421081  T
Q  321 ttttaaaggatgtgccacatgacaca 346  Q
    ||||||||  | ||||||||||||||    
T  13421080 ttttaaagtgtatgccacatgacaca 13421055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 246 - 338
Target Start/End: Original strand, 10292897 - 10292989
Alignment:
Q  246 aatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatattttttaaaggatgtgccac 338  Q
    |||| |||||| ||||||||||| ||| |||||||| ||| ||||||| ||| ||| || |||||||||||| ||||||||||| ||||||||    
T  10292897 aatgttatataacattggccaataagaatgtgccacgtactaatgttattttgtaagtgttttatttgatattttttttaaagggtgtgccac 10292989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 277 - 324
Target Start/End: Original strand, 42148201 - 42148248
Alignment:
Q  277 gccacctaccaatgttactttataaatgctttatttgatatatttttt 324  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||    
T  42148201 gccacctaccaatgttactttataaatgttttatttgatatatttttt 42148248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 37881189 - 37881243
Alignment:
Q  270 agagtgtgccacctaccaatgttactttataaatgctttatttgatatatttttt 324  Q
    |||||||||||| |||||||||||||||||||||  |||||||||||||| ||||    
T  37881189 agagtgtgccacataccaatgttactttataaatattttatttgatatatgtttt 37881243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 112; Significance: 2e-56; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 217 - 355
Target Start/End: Complemental strand, 34392257 - 34392118
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34392257 ggattccacttgtgtaccattgaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatcttactttataaatgctttatttgata 34392158  T
Q  317 tatt-ttttaaaggatgtgccacatgacacaatctaattg 355  Q
    |||| ||||||||| ||||||||||| |||||||||||||    
T  34392157 tatttttttaaagggtgtgccacatggcacaatctaattg 34392118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 216 - 355
Target Start/End: Original strand, 7381686 - 7381825
Alignment:
Q  216 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgat 315  Q
    |||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  7381686 tggattccgcttgtgtaccattaaggtaccaatggtatatactattggccaattagagtgtgccatctaccaatgttactttataaattctttatttgat 7381785  T
Q  316 atattttttaaaggatgtgccacatgacacaatctaattg 355  Q
    ||||||||||||||||||| ||  ||||||| | ||||||    
T  7381786 atattttttaaaggatgtgtcatgtgacacattttaattg 7381825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 215 - 334
Target Start/End: Original strand, 21603952 - 21604072
Alignment:
Q  215 ttggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttga 314  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||  |||||||||||||||||||||||||| |||||||||    
T  21603952 ttggattccacttgtgtaccattaaggtaccaatggtatataccattgaccaattatagtgtatcacctaccaatgttactttataaatgttttatttga 21604051  T
Q  315 tata-ttttttaaaggatgtg 334  Q
    |||| ||||||| ||||||||    
T  21604052 tatacttttttataggatgtg 21604072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 236 - 355
Target Start/End: Complemental strand, 23863958 - 23863840
Alignment:
Q  236 ttaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatat-tttttaaaggatgtg 334  Q
    ||||||||| ||||||||||   ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  23863958 ttaaggtaccaatggtatatt--attggtcaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatatttttaaagggtgtg 23863861  T
Q  335 ccacatgacacaatctaattg 355  Q
    ||||||| |||| ||||||||    
T  23863860 ccacatggcacattctaattg 23863840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 217 - 324
Target Start/End: Complemental strand, 37358097 - 37357990
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    |||||||||||||||| ||||||||||| |||| |||||||||||| | |||||||||||| |||||| ||||||||||||||||||||||||||| |||    
T  37358097 ggattccacttgtgtatcattaaggtaccaatgatatataccattgactaattagagtgtgtcacctatcaatgttactttataaatgctttatttaata 37357998  T
Q  317 tatttttt 324  Q
    | ||||||    
T  37357997 tttttttt 37357990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 250 - 355
Target Start/End: Original strand, 4779613 - 4779719
Alignment:
Q  250 gtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata-ttttttaaaggatgtgccacatgacacaat 348  Q
    |||||||||||||  || ||| |||||||| |||| |||||||||||||||||| |||||||||||||| |||||||||||||||| ||| ||||||| |    
T  4779613 gtatataccattgatcacttatagtgtgccgcctaacaatgttactttataaatactttatttgatatatttttttaaaggatgtgtcacgtgacacatt 4779712  T
Q  349 ctaattg 355  Q
    |||||||    
T  4779713 ctaattg 4779719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 222 - 355
Target Start/End: Original strand, 4775634 - 4775769
Alignment:
Q  222 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttacttta-taaatgctttatttgatata-t 319  Q
    |||||| |||||||||||| ||| |||| ||||||  |||||||||||||| |||  || |||||||| |||||||| ||| || ||||||| ||||| |    
T  4775634 ccacttatgtaccattaagctaccaatgatatatattattggccaattagaatgtctcatctaccaatcttactttattaattgttttatttaatatatt 4775733  T
Q  320 tttttaaaggatgtgccacatgacacaatctaattg 355  Q
    |||||||||||||||||||||| |||||| ||||||    
T  4775734 tttttaaaggatgtgccacatggcacaatttaattg 4775769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 253 - 324
Target Start/End: Complemental strand, 41095926 - 41095855
Alignment:
Q  253 tataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatttttt 324  Q
    ||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||| |||||||    
T  41095926 tatacaattggtcaattagagtgcaccacctaccaatgttactttataaatgctttatttgatagatttttt 41095855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 227 - 337
Target Start/End: Complemental strand, 14566019 - 14565908
Alignment:
Q  227 tgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata-tttttta 325  Q
    ||||||||| |||||||| |||| |||||| |||||  ||| |||||||||| || ||||||| ||| ||||||| | ||| |||||||||| |||||||    
T  14566019 tgtgtaccactaaggtaccaatgttatatatcattgatcaagtagagtgtgctacataccaatattattttataagtacttcatttgatatagtttttta 14565920  T
Q  326 aaggatgtgcca 337  Q
    ||||||||||||    
T  14565919 aaggatgtgcca 14565908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 273 - 355
Target Start/End: Complemental strand, 25275741 - 25275659
Alignment:
Q  273 gtgtgccacctaccaatgttactttataaatgctttatttgatata-ttttttaaaggatgtgccacatgacacaatctaattg 355  Q
    |||||||||||| |||||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||| ||| ||||||||    
T  25275741 gtgtgccacctatcaatgttacttt-taaatactttatttgatatacttttttaaaggatgtgccacgtgatacattctaattg 25275659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 325
Target Start/End: Original strand, 34903967 - 34904005
Alignment:
Q  287 aatgttactttataaatgctttatttgatatatttttta 325  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  34903967 aatgttattttataaatgctttatttgatatatttttta 34904005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 241 - 341
Target Start/End: Original strand, 10163501 - 10163603
Alignment:
Q  241 gtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--ttttttaaaggatgtgccac 338  Q
    |||| |||| |||||| ||||| ||||| | | |||||||| |||  || |||||||||||||  |||||||||||||  |||||||||| |||||| ||    
T  10163501 gtaccaatgttatataacattgaccaataaaaatgtgccacatactgatattactttataaataatttatttgatatatgttttttaaagtatgtgctac 10163600  T
Q  339 atg 341  Q
    |||    
T  10163601 atg 10163603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 9e-55; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 216 - 355
Target Start/End: Original strand, 32676130 - 32676270
Alignment:
Q  216 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgat 315  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||    
T  32676130 tggattccacttgtgtaccattaaggtaccaatggtatataccattggccaattagaatgcaccacctaccaatgttactttataaatgctttatttgat 32676229  T
Q  316 ata-ttttttaaaggatgtgccacatgacacaatctaattg 355  Q
    ||| |||||||||| |||||||||||| |||||||||||||    
T  32676230 atatttttttaaagcatgtgccacatggcacaatctaattg 32676270  T

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Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 217 - 355
Target Start/End: Complemental strand, 29119500 - 29119361
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||||||||||    
T  29119500 ggataccacttgtgtaccattaaggtaccaatggtatataccattggccaattagagtgtgccacctatcattgttactttatagatgctttatttgata 29119401  T
Q  317 tatt-ttttaaaggatgtgccacatgacacaatctaattg 355  Q
    |||| ||||||||| ||||||||||| |||| ||||||||    
T  29119400 tatttttttaaagggtgtgccacatggcacattctaattg 29119361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 222 - 354
Target Start/End: Original strand, 2569037 - 2569169
Alignment:
Q  222 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatattt 321  Q
    ||||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||||||||||||||||| |||  |||||||||||||||||||||    
T  2569037 ccacttgtgtaccattaaggtaccaatggtatatatcatttgccaattagagtgtgccacctaccaatgttacattaccaatgctttatttgatatattt 2569136  T
Q  322 tttaaaggatgtgccacatgacacaatctaatt 354  Q
    |||||||| |||||||  || |||| |||||||    
T  2569137 tttaaagggtgtgccatgtggcacattctaatt 2569169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 222 - 346
Target Start/End: Complemental strand, 8809811 - 8809685
Alignment:
Q  222 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--t 319  Q
    ||||||||||||||||||||||| |||| |||||| ||||| ||||| |||||||||||| |||||||||||||||||||||| |||||||||||||  |    
T  8809811 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataagagtgtgccacgtaccaatgttactttataaatgttttatttgatatatgt 8809712  T
Q  320 tttttaaaggatgtgccacatgacaca 346  Q
    |||||||||  ||||||||||| ||||    
T  8809711 tttttaaagtgtgtgccacatgtcaca 8809685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 217 - 315
Target Start/End: Original strand, 25161304 - 25161402
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgat 315  Q
    ||||||||||||||||||||||| ||   ||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||| ||||||||||    
T  25161304 ggattccacttgtgtaccattaaagtctcaatggtatataccattgaccaattacagtgtgccacctaacaatgttactttataaatgttttatttgat 25161402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 217 - 355
Target Start/End: Original strand, 8462124 - 8462262
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    ||||||||||||||||  ||||| |||| ||||||||||| |||||  |||||| |||||||||||||||||||||| |||||||||| ||||||| |||    
T  8462124 ggattccacttgtgtat-attaaagtaccaatggtatatatcattgatcaattatagtgtgccacctaccaatgttattttataaatgttttatttaata 8462222  T
Q  317 ta-ttttttaaaggatgtgccacatgacacaatctaattg 355  Q
    || |||||||||||  ||||||| ||||||| | ||||||    
T  8462223 tacttttttaaagggcgtgccacgtgacacattttaattg 8462262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 217 - 355
Target Start/End: Complemental strand, 46435629 - 46435502
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    |||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | |||            ||||||| |||||||||||||||    
T  46435629 ggataccacttgtgtaccattaaggtaccaatggtatatacaattggccaattagagtgcgtcac------------ctttatagatgctttatttgata 46435542  T
Q  317 tat-tttttaaaggatgtgccacatgacacaatctaattg 355  Q
    ||| |||||||||| |||| ||||||||||| ||||||||    
T  46435541 tatatttttaaagggtgtgtcacatgacacattctaattg 46435502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 219 - 303
Target Start/End: Complemental strand, 7214585 - 7214501
Alignment:
Q  219 attccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaat 303  Q
    |||||| ||||||||||||||||||||||| |||||||  ||||| ||||||||||||| |||||| | || |||||||||||||    
T  7214585 attccatttgtgtaccattaaggtactaatagtatatattattggtcaattagagtgtgtcacctatcgatattactttataaat 7214501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 222 - 346
Target Start/End: Original strand, 35998252 - 35998378
Alignment:
Q  222 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--t 319  Q
    |||||||| |||||||||||||| |||| |||||| |||||   ||| |||||||||||| || |||||||| ||||||| || ||||||| |||||  |    
T  35998252 ccacttgtataccattaaggtaccaatgttatataacattgattaataagagtgtgccacatatcaatgttattttataagtgttttattttatatatgt 35998351  T
Q  320 tttttaaaggatgtgccacatgacaca 346  Q
    |||||||||  ||||||||||| ||||    
T  35998352 tttttaaagtgtgtgccacatggcaca 35998378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 3688980 - 3688917
Alignment:
Q  251 tatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttga 314  Q
    |||||| ||||| ||||||||||||| | ||||||||||||||||||||||||| |||||||||    
T  3688980 tatatatcattgaccaattagagtgtacaacctaccaatgttactttataaatgttttatttga 3688917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 346
Target Start/End: Original strand, 35534413 - 35534528
Alignment:
Q  229 tgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatattttttaaag 328  Q
    |||| ||||||| ||| |||| |||||| |||||| || | |||||||||||| ||| ||||| | ||||||| || |||||||   |||||||||||||    
T  35534413 tgtatcattaagataccaatgttatataacattggacactgagagtgtgccacatactaatgtcaatttataagtgttttattt--aatattttttaaag 35534510  T
Q  329 gatgtgccacatgacaca 346  Q
    | ||||||||||||||||    
T  35534511 ggtgtgccacatgacaca 35534528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 264 - 327
Target Start/End: Original strand, 8555471 - 8555534
Alignment:
Q  264 ccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatattttttaaa 327  Q
    ||||||| | |||| ||| ||||||||||| |||||||||| |||||||||| |||||| ||||    
T  8555471 ccaattaaaatgtgtcacataccaatgttattttataaatgttttatttgatgtattttataaa 8555534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 320
Target Start/End: Original strand, 6223052 - 6223149
Alignment:
Q  223 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatt 320  Q
    ||||||||||||||||| |||  |||| |||||| |||||  ||||||  ||||| ||  || |||||||| ||||||| |  |||||||||||||||    
T  6223052 cacttgtgtaccattaaagtatcaatgttatatatcattgatcaattaaggtgtgtcatatatcaatgttattttataagtattttatttgatatatt 6223149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 16679868 - 16679821
Alignment:
Q  223 cacttgtgtaccattaaggtactaatggtatataccattggccaattag 271  Q
    |||||||||||||||||||||| |||| ||||||| ||| |||||||||    
T  16679868 cacttgtgtaccattaaggtaccaatgttatatactatt-gccaattag 16679821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 217 - 355
Target Start/End: Complemental strand, 33249550 - 33249411
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    ||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33249550 ggatttcacttgtgtaccattaaggtacaaatggtatatacaattggccaattagagtgtgtcacctaccaatgttactttataaatgctttatttgata 33249451  T
Q  317 tat-tttttaaaggatgtgccacatgacacaatctaattg 355  Q
    ||| |||||||||| ||||||||||| |||||||||||||    
T  33249450 tatatttttaaagggtgtgccacatggcacaatctaattg 33249411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 217 - 355
Target Start/End: Original strand, 12473699 - 12473838
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12473699 ggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 12473798  T
Q  317 ta-ttttttaaaggatgtgccacatgacacaatctaattg 355  Q
    || ||||||||||| |||| ||||||||||| ||||||||    
T  12473799 tatttttttaaagggtgtggcacatgacacattctaattg 12473838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 217 - 355
Target Start/End: Original strand, 12528108 - 12528247
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    |||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12528108 ggataccacttgtataccattaaggtaccaatggtatataccattggccaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 12528207  T
Q  317 ta-ttttttaaaggatgtgccacatgacacaatctaattg 355  Q
    || ||||||||||| |||| ||||||||||| ||||||||    
T  12528208 tatttttttaaagggtgtggcacatgacacattctaattg 12528247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 219 - 355
Target Start/End: Original strand, 22343334 - 22343471
Alignment:
Q  219 attccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata 318  Q
    |||||||||||||||||||||||||  ||||||||||| ||||| |||||||||||||| || ||| |||||||||||||||||||||||||||||||||    
T  22343334 attccacttgtgtaccattaaggtatcaatggtatatatcattgaccaattagagtgtgtcatctatcaatgttactttataaatgctttatttgatata 22343433  T
Q  319 tt-ttttaaaggatgtgccacatgacacaatctaattg 355  Q
    || |||||||||||||||||||||||||| ||||||||    
T  22343434 ttattttaaaggatgtgccacatgacacattctaattg 22343471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 215 - 355
Target Start/End: Complemental strand, 35869749 - 35869608
Alignment:
Q  215 ttggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttga 314  Q
    |||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||| |||||||| |||||||||    
T  35869749 ttggtttccacttgtgtaccattaaggtaccaatggtatataccattgaccaattataatgtgccacctaccaatgttactatataaatgttttatttga 35869650  T
Q  315 tata-ttttttaaaggatgtgccacatgacacaatctaattg 355  Q
    |||| ||||||||||| |||||||| ||||||| ||||||||    
T  35869649 tatacttttttaaagggtgtgccacgtgacacattctaattg 35869608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 217 - 355
Target Start/End: Original strand, 21260789 - 21260928
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    ||||||||||| | |||||||||||||| |||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  21260789 ggattccacttatataccattaaggtaccaatgatatatatcattggccaattagagtgtgtcacctaccaatgttactttataaatgttttatttgata 21260888  T
Q  317 ta-ttttttaaaggatgtgccacatgacacaatctaattg 355  Q
    || ||||||||||| ||||||||||| |||| ||||||||    
T  21260889 tatttttttaaagggtgtgccacatggcacattctaattg 21260928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 217 - 355
Target Start/End: Original strand, 51811909 - 51812048
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    |||||||||| ||||||||||||||||  || | ||||||  |||||||||||||||| ||||||||||||||||||||||||||||  ||| |||||||    
T  51811909 ggattccactcgtgtaccattaaggtatcaaagatatatattattggccaattagagtatgccacctaccaatgttactttataaattttttttttgata 51812008  T
Q  317 ta-ttttttaaaggatgtgccacatgacacaatctaattg 355  Q
    || ||||||||||| |||||||  ||||||| ||||||||    
T  51812009 tatttttttaaagggtgtgccatgtgacacattctaattg 51812048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 222 - 346
Target Start/End: Original strand, 52012778 - 52012904
Alignment:
Q  222 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--t 319  Q
    ||||||||||||||||||||||| |||| |||||| ||||| ||||| | |||||||||| |||||||||||||||||||||| |||||||||||||  |    
T  52012778 ccacttgtgtaccattaaggtaccaatgttatataacattgaccaataaaagtgtgccacataccaatgttactttataaatgttttatttgatatatgt 52012877  T
Q  320 tttttaaaggatgtgccacatgacaca 346  Q
    |||||||||  ||||||||||| ||||    
T  52012878 tttttaaagtgtgtgccacatgtcaca 52012904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 223 - 316
Target Start/End: Complemental strand, 52910219 - 52910126
Alignment:
Q  223 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    |||||||||||||| | ||||| |||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  52910219 cacttgtgtaccataatggtaccaatgttatataccattggccaattaaagtgtgccacctaccaatattactttataaatgctttatttgata 52910126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 355
Target Start/End: Original strand, 55590477 - 55590605
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||  |||||| |||||| |||||||||||||||           ||||||||||||    
T  55590477 ggattccacttgtgtaccattaaggtaccaatggtatatatcattgatcaattatagtgtgtcacctaccaatgtta-----------ctttatttgata 55590565  T
Q  317 ta-ttttttaaaggatgtgccacatgacacaatctaattg 355  Q
    || |||||||||||||||||||| ||||||| ||||||||    
T  55590566 tacttttttaaaggatgtgccacgtgacacattctaattg 55590605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 319
Target Start/End: Complemental strand, 49999758 - 49999662
Alignment:
Q  223 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatat 319  Q
    |||||||||||||| ||| |||||||| ||| |  |||||| ||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||    
T  49999758 cacttgtgtaccatcaagatactaatgttatgtgtcattggtcaattagagtgtgtcacataccaatgttattttataaatgctttatttgatatat 49999662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 222 - 346
Target Start/End: Complemental strand, 9799534 - 9799408
Alignment:
Q  222 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--t 319  Q
    |||||||| |||||||||||||| |||| |||||| ||||| ||||  ||| |||||||| |||||||||||||||||||||| ||||||| |||||  |    
T  9799534 ccacttgtataccattaaggtaccaatgttatataacattgaccaacaagaatgtgccacataccaatgttactttataaatgttttatttaatatatgt 9799435  T
Q  320 tttttaaaggatgtgccacatgacaca 346  Q
    |||||||||  |||| |||||| ||||    
T  9799434 tttttaaagtgtgtgtcacatgtcaca 9799408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 217 - 308
Target Start/End: Complemental strand, 34829259 - 34829168
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgcttt 308  Q
    ||||| ||||| ||||| |||||||||| |||| |||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||    
T  34829259 ggatttcacttatgtactattaaggtaccaatgatatatatcaatggccaattaaagtgtgtcacctaccaatgttactttataaatgcttt 34829168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 1796163 - 1796222
Alignment:
Q  253 tataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttattt 312  Q
    |||||||||||||||||| | ||||||||||| ||||||||||||||||||| |||||||    
T  1796163 tataccattggccaattatattgtgccacctatcaatgttactttataaatgttttattt 1796222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 246 - 315
Target Start/End: Original strand, 46719954 - 46720023
Alignment:
Q  246 aatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgat 315  Q
    |||| |||||| ||||| ||||| |||||||||||| ||| ||||||||||||||||| |||||||||||    
T  46719954 aatgttatataacattgaccaataagagtgtgccacatacaaatgttactttataaatactttatttgat 46720023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 217 - 338
Target Start/End: Original strand, 33174513 - 33174630
Alignment:
Q  217 ggattccacttgtgtaccattaaggt-actaatggtatataccattggccaattagagtgtgccacctaccaat----gttactttataaatgctttatt 311  Q
    |||||||||||||||||||||||||| || ||  ||||||||||||||        |||||  |||||||||||    ||||||||||||||| ||||||    
T  33174513 ggattccacttgtgtaccattaaggttaccaagagtatataccattgg--------agtgtatcacctaccaatatatgttactttataaatgttttatt 33174604  T
Q  312 tgatatattttttaaaggatgtgccac 338  Q
    ||||||| |||||||||| ||||||||    
T  33174605 tgatata-tttttaaagggtgtgccac 33174630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 281
Target Start/End: Original strand, 49998486 - 49998541
Alignment:
Q  226 ttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccac 281  Q
    ||||||||||||||||||| |||  |||||| |||||||||||||| |||||||||    
T  49998486 ttgtgtaccattaaggtaccaatattatatatcattggccaattagggtgtgccac 49998541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 346
Target Start/End: Original strand, 47943158 - 47943285
Alignment:
Q  222 ccacttgtgtaccattaaggtactaatggtatataccattgg-ccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata-- 318  Q
    ||||||||||||||||||  ||| |||| ||||||  ||| | ||||| | | |||||||| ||||||| ||| |||||||||  |||||||||||||      
T  47943158 ccacttgtgtaccattaaaataccaatgttatataatatttgaccaataaaaatgtgccacataccaatattattttataaatattttatttgatatatg 47943257  T
Q  319 ttttttaaaggatgtgccacatgacaca 346  Q
    |||||||||   ||||||||||| ||||    
T  47943258 ttttttaaaatgtgtgccacatgtcaca 47943285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 35781063 - 35781027
Alignment:
Q  245 taatggtatataccattggccaattagagtgtgccac 281  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  35781063 taatggtatataccattgcccaattagaatgtgccac 35781027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 2e-49; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 217 - 355
Target Start/End: Original strand, 35341531 - 35341670
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    |||||||||||||||||||||||||||| |||| |||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  35341531 ggattccacttgtgtaccattaaggtaccaatgatatataccattgaccaattatagtgtgccacctaccaatgttactttataaatgttttatttgata 35341630  T
Q  317 ta-ttttttaaaggatgtgccacatgacacaatctaattg 355  Q
    || ||||||||||| |||||||| ||||||| ||||||||    
T  35341631 tacttttttaaagggtgtgccacgtgacacattctaattg 35341670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 217 - 324
Target Start/End: Original strand, 48250149 - 48250256
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    |||| ||||||||||||||||||||||| |||| |||||| |||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  48250149 ggataccacttgtgtaccattaaggtaccaatgatatatatcattggtcaattagagtgtgccacctaccaatgttactttatagatgctttatttgata 48250248  T
Q  317 tatttttt 324  Q
    | ||||||    
T  48250249 tttttttt 48250256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 242 - 354
Target Start/End: Complemental strand, 32694721 - 32694608
Alignment:
Q  242 tactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatt-ttttaaaggatgtgccacat 340  Q
    |||||||| |||||||||||||  ||||||||||| ||| ||| |||||||||||||||||| |||||||||||||||| ||||||||| |||||||| |    
T  32694721 tactaatgatatataccattggtaaattagagtgtcccatctatcaatgttactttataaattctttatttgatatatttttttaaagggtgtgccacgt 32694622  T
Q  341 gacacaatctaatt 354  Q
    |||||| |||||||    
T  32694621 gacacattctaatt 32694608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 218 - 355
Target Start/End: Original strand, 48072385 - 48072521
Alignment:
Q  218 gattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatat 317  Q
    |||||||||||||||| |||||||||| ||| |||||  ||||||  ||||||||||||||||| |  |||||||| |||||||||  |||||||||| |    
T  48072385 gattccacttgtgtactattaaggtaccaatagtata--ccattgatcaattagagtgtgccacatttcaatgttattttataaatattttatttgatgt 48072482  T
Q  318 a-ttttttaaaggatgtgccacatgacacaatctaattg 355  Q
    | ||||||||||| |||||||| || |||| ||||||||    
T  48072483 atttttttaaagggtgtgccacgtggcacattctaattg 48072521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 216 - 320
Target Start/End: Complemental strand, 40893219 - 40893114
Alignment:
Q  216 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgc-tttatttga 314  Q
    ||||| |||||||| |||||| || ||| ||||||||||||||||||| |||||||| |||  || ||| |||||||||||||||||||| |||||||||    
T  40893219 tggataccacttgtataccatcaaagtattaatggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgcttttatttga 40893120  T
Q  315 tatatt 320  Q
    ||||||    
T  40893119 tatatt 40893114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 226 - 315
Target Start/End: Complemental strand, 31307041 - 31306951
Alignment:
Q  226 ttgtgtaccattaaggtactaatggtatataccattggccaatt-agagtgtgccacctaccaatgttactttataaatgctttatttgat 315  Q
    |||||||||||||| |||  |||| |||||| ||||| |||||| | ||||||| ||||||||||||||||||||||||||||||||||||    
T  31307041 ttgtgtaccattaaagtatcaatgatatatatcattgtccaatttaaagtgtgctacctaccaatgttactttataaatgctttatttgat 31306951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 270 - 329
Target Start/End: Original strand, 40856479 - 40856538
Alignment:
Q  270 agagtgtgccacctaccaatgttactttataaatgctttatttgatatattttttaaagg 329  Q
    |||||||| ||||||||||||||| |||||| ||| |||||||||| |||||||| ||||    
T  40856479 agagtgtgtcacctaccaatgttattttatagatgttttatttgatgtatttttttaagg 40856538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 286
Target Start/End: Original strand, 40856387 - 40856456
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacc 286  Q
    |||| |||||| |||| |||||||||||||||| ||||||  ||||  ||||||||||||| ||||||||    
T  40856387 ggataccacttatgtatcattaaggtactaatgatatatattattgatcaattagagtgtgtcacctacc 40856456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 319 - 355
Target Start/End: Original strand, 40856943 - 40856979
Alignment:
Q  319 ttttttaaaggatgtgccacatgacacaatctaattg 355  Q
    ||||||||||| |||||||||||||||| ||||||||    
T  40856943 ttttttaaagggtgtgccacatgacacattctaattg 40856979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 48072541 - 48072505
Alignment:
Q  245 taatggtatataccattggccaattagagtgtgccac 281  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  48072541 taatggtatataccattgcccaattagaatgtgccac 48072505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 217 - 355
Target Start/End: Original strand, 34189 - 34327
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    |||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||| ||||||| |||||||||||||  |||||||||||    
T  34189 ggattccacttgtgtaccattaaggtaccaatggtatatattattggccaattagagtgtgccacttaccaatattactttataaatattttatttgata 34288  T
Q  317 tattttttaaaggatgtgccacatgacacaatctaattg 355  Q
    ||||||||||||| |||| ||| ||||||| ||||||||    
T  34289 tattttttaaagggtgtgtcacgtgacacattctaattg 34327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 3e-42; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 217 - 355
Target Start/End: Complemental strand, 41179739 - 41179600
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    |||||||||||||||||||||||||||| |||| |||||| ||||||||||||| |||||| |||||||| ||||||||||||||||| ||||||| |||    
T  41179739 ggattccacttgtgtaccattaaggtaccaatgatatatatcattggccaattaaagtgtgtcacctaccgatgttactttataaatgttttatttaata 41179640  T
Q  317 tatt-ttttaaaggatgtgccacatgacacaatctaattg 355  Q
    |||| |||||| |||||||||||||| |||| ||||||||    
T  41179639 tatttttttaatggatgtgccacatggcacattctaattg 41179600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 229 - 354
Target Start/End: Original strand, 18168392 - 18168519
Alignment:
Q  229 tgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--ttttttaa 326  Q
    |||||||||||||||| ||||||||||| |||||  |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||  ||||||||    
T  18168392 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaa 18168491  T
Q  327 aggatgtgccacatgacacaatctaatt 354  Q
    |||||||||||| |||||||||||||||    
T  18168492 aggatgtgccacgtgacacaatctaatt 18168519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 229 - 354
Target Start/End: Original strand, 18631949 - 18632076
Alignment:
Q  229 tgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--ttttttaa 326  Q
    |||||||||||||||| ||||||||||| |||||  |||||||||||| |||||||||||| ||||||||||||| ||||||||||||||  ||||||||    
T  18631949 tgtaccattaaggtaccaatggtatatatcattgatcaattagagtgtcccacctaccaatcttactttataaatactttatttgatatattttttttaa 18632048  T
Q  327 aggatgtgccacatgacacaatctaatt 354  Q
    |||||||||||| |||||||||||||||    
T  18632049 aggatgtgccacgtgacacaatctaatt 18632076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 217 - 355
Target Start/End: Complemental strand, 24338006 - 24337867
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    |||| |||||||||||| |||||||||  ||||||||||||||| || |||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  24338006 ggataccacttgtgtactattaaggtagcaatggtatataccatcggtcaattagagtgtgccatctaccaatgttactttatagatgctttatttgata 24337907  T
Q  317 tat-tttttaaaggatgtgccacatgacacaatctaattg 355  Q
    ||| |||||||||| ||||||||||  |||| ||||||||    
T  24337906 tatatttttaaagggtgtgccacatagcacattctaattg 24337867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 230 - 354
Target Start/End: Complemental strand, 4708470 - 4708345
Alignment:
Q  230 gtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatat-tttttaaag 328  Q
    |||||| |||||||| ||||| ||||| |||  |||||||| |||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  4708470 gtaccactaaggtaccaatggcatatatcatgcgccaattaaagtgtgtcacctaccaatgttactttataaatgttttatttgatatatatttttaaag 4708371  T
Q  329 gatgtgccacatgacacaatctaatt 354  Q
    | |||||||| || |||| |||||||    
T  4708370 ggtgtgccacgtggcacattctaatt 4708345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 218 - 352
Target Start/End: Complemental strand, 11254202 - 11254068
Alignment:
Q  218 gattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatat 317  Q
    ||||||||||||||||||||||  ||| |||| |||||| ||||| ||| ||| ||| | ||||||||||||||||||||||||||| ||||||||||||    
T  11254202 gattccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatat 11254104  T
Q  318 a-ttttttaaaggatgtgccacatgacacaatctaa 352  Q
    |  |||||||||| |||||||| ||||||| |||||    
T  11254103 acatttttaaagggtgtgccacgtgacacattctaa 11254068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 222 - 324
Target Start/End: Original strand, 1514803 - 1514905
Alignment:
Q  222 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatattt 321  Q
    ||||||||||||||||||||||| |||| |||||| |||||  |||| ||||||| |||| |||||||||||||||||||||| |||||||||||||| |    
T  1514803 ccacttgtgtaccattaaggtaccaatgttatataacattgatcaataagagtgtaccacataccaatgttactttataaatgttttatttgatatatat 1514902  T
Q  322 ttt 324  Q
    |||    
T  1514903 ttt 1514905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 223 - 346
Target Start/End: Complemental strand, 32826005 - 32825881
Alignment:
Q  223 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatttt 322  Q
    ||||||||||||||||| |||  |||| | |||||||||||||||||||||| || ||| || |||||||| ||||||  || |||||||||||||||||    
T  32826005 cacttgtgtaccattaaagtatcaatgttgtataccattggccaattagagtatgtcacatatcaatgttattttatatgtgttttatttgatatatttt 32825906  T
Q  323 tt-aaaggatgtgccacatgacaca 346  Q
    || ||||| |||| |||||||||||    
T  32825905 ttaaaaggttgtgtcacatgacaca 32825881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 217 - 353
Target Start/End: Complemental strand, 1212020 - 1211883
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||  ||||||||||||||  |||||||||||||||    
T  1212020 ggatttcacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgata 1211921  T
Q  317 tatt-ttttaaaggatgtgccacatgacacaatctaat 353  Q
    |||| ||||||||| |||||||| || |||| ||||||    
T  1211920 tatttttttaaagggtgtgccacgtggcacattctaat 1211883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 217 - 355
Target Start/End: Complemental strand, 5404052 - 5403913
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    |||| |||||||||||||||||||||||||||||||||||  ||||| || ||||||| ||||||||||||||||||||||||| ||| |||||||||||    
T  5404052 ggataccacttgtgtaccattaaggtactaatggtatatattattggtcagttagagtctgccacctaccaatgttactttatagatgttttatttgata 5403953  T
Q  317 tatt-ttttaaaggatgtgccacatgacacaatctaattg 355  Q
    |||| |||||||||  ||  ||||||||||| ||||||||    
T  5403952 tatttttttaaagggcgtatcacatgacacattctaattg 5403913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 222 - 346
Target Start/End: Original strand, 34245567 - 34245693
Alignment:
Q  222 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatata--t 319  Q
    |||||||||||||||||||||| ||||| |||||| ||||| ||||| | |||||||||| ||||||||||||||||||||| ||||||||||||||  |    
T  34245567 ccacttgtgtaccattaaggtattaatgttatataacattgaccaataaaagtgtgccacgtaccaatgttactttataaatactttatttgatatatgt 34245666  T
Q  320 tttttaaaggatgtgccacatgacaca 346  Q
    |||||||||  ||||||||||||||||    
T  34245667 tttttaaagtgtgtgccacatgacaca 34245693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 216 - 355
Target Start/End: Complemental strand, 32645013 - 32644874
Alignment:
Q  216 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgat 315  Q
    |||||||||| |||||||||||||| ||   || ||||||| |||||||||||||  ||||| ||||||| |||||||||||| |||| ||||||||| |    
T  32645013 tggattccacctgtgtaccattaagatatcgatagtatatatcattggccaattaaggtgtgtcacctacaaatgttacttta-aaatactttatttgtt 32644915  T
Q  316 ata-ttttttaaaggatgtgccacatgacacaatctaattg 355  Q
    ||| ||||||||||| |||||||||||| ||||||||||||    
T  32644914 atatttttttaaagggtgtgccacatgatacaatctaattg 32644874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 223 - 346
Target Start/End: Original strand, 11113557 - 11113677
Alignment:
Q  223 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatttt 322  Q
    |||||||||||||||||||||| |||| |||||| ||||| | ||| |||||||| ||| ||| ||||||||||| ||| |||||||||||||   ||||    
T  11113557 cacttgtgtaccattaaggtaccaatgctatataacattgactaataagagtgtgtcacatactaatgttactttgtaagtgctttatttgat---tttt 11113653  T
Q  323 ttaaaggatgtgccacatgacaca 346  Q
    |||||||||| |||||||| ||||    
T  11113654 ttaaaggatgcgccacatggcaca 11113677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 11753167 - 11753232
Alignment:
Q  222 ccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctacca 287  Q
    ||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||    
T  11753167 ccacttgtgtaccattaaggtaccaatggtatataccatcggccaattagagtgtcccacctacca 11753232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 217 - 324
Target Start/End: Complemental strand, 13182 - 13075
Alignment:
Q  217 ggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgata 316  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||  ||||||||||||||  |||||||||||||||    
T  13182 ggatttcacttgtgtaccattaaggtaccaatggtatataccattggctaattagtgtgtgccacctttcaatgttactttatcgatgctttatttgata 13083  T
Q  317 tatttttt 324  Q
    ||||||||    
T  13082 tatttttt 13075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 218 - 352
Target Start/End: Original strand, 11191 - 11325
Alignment:
Q  218 gattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatat 317  Q
    ||||||||||||||||||||||  ||| |||| |||||| ||||| ||| ||| ||| | ||||||||||||||||||||||||||| ||||||||||||    
T  11191 gattccacttgtgtaccattaaattaccaatgatatatatcattgacca-ttatagtataccacctaccaatgttactttataaatgttttatttgatat 11289  T
Q  318 a-ttttttaaaggatgtgccacatgacacaatctaa 352  Q
    |  |||||||||| |||||||| ||||||| |||||    
T  11290 acatttttaaagggtgtgccacgtgacacattctaa 11325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 223 - 327
Target Start/End: Complemental strand, 23263 - 23165
Alignment:
Q  223 cacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgctttatttgatatatttt 322  Q
    |||||||||||||||||||||| |      |||| |||||||||||||||||||||||||||||||| |||||||||||||  |||||||||||||||||    
T  23263 cacttgtgtaccattaaggtacga------tatatcattggccaattagagtgtgccacctaccaattttactttataaatattttatttgatatatttt 23170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 23094 - 23142
Alignment:
Q  223 cacttgtgtaccattaaggtactaatggtatataccattggccaattag 271  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||||    
T  23094 cacttgtgtatcattaaggtaccaatggtatatactattggccaattag 23142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 216 - 320
Target Start/End: Original strand, 73065 - 73170
Alignment:
Q  216 tggattccacttgtgtaccattaaggtactaatggtatataccattggccaattagagtgtgccacctaccaatgttactttataaatgc-tttatttga 314  Q
    ||||| |||||||| |||||| || ||| ||||||||||||||||||| |||||||| |||  || ||| |||||||||||||||||||| |||||||||    
T  73065 tggataccacttgtataccatcaaagtattaatggtatataccattggtcaattagaatgtctcatctatcaatgttactttataaatgcttttatttga 73164  T
Q  315 tatatt 320  Q
    ||||||    
T  73165 tatatt 73170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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