View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_low_22 (Length: 361)
Name: NF3234_low_22
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 13 - 346
Target Start/End: Complemental strand, 32583017 - 32582690
Alignment:
| Q |
13 |
aatatcaaactctcatctcaaccttcctttgttgatcagaatctcctttatcatctccaaaatcaacaatctgaaatcgatctcttcattgctcaacatg |
112 |
Q |
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| T |
32583017 |
aatatcaaactctcatctcaaccttcctttgttgatcagaatctcctttatcatctccaaaatcaacaatctgaaatcgatctcttcattgctcaacatg |
32582918 |
T |
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| Q |
113 |
taagcaaattaattcatctttcacnnnnnnnnnnaaattttgttcaaggaaaaagaaactgttaaaaggaagtaacagatttattgcttagattatgtga |
212 |
Q |
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| T |
32582917 |
taagcaa-ttaattcatctttcacttttttt-----attttgttcaaggaaaaagaaactgttaaaaggaagttacagatttattgcttagattttgtga |
32582824 |
T |
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| Q |
213 |
ttatggttaattattactaattaatactccatttgttaatcaacagacagagagagtgagaatggagatagaagagcaaagattgaagcaatcaagaatg |
312 |
Q |
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| T |
32582823 |
ttatggttaattattactaatgaatacttcatttgttaattaacagacagagagagtgagaatggagatagaagagcaaagattgaagcaatcaagaatg |
32582724 |
T |
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| Q |
313 |
ctacaagcggcaatccaagaagcagtaacaaaga |
346 |
Q |
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| T |
32582723 |
ctacaagcggcaatccaagaagcagtaacaaaga |
32582690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 38146610 - 38146675
Alignment:
| Q |
18 |
caaactctcatctcaaccttcctttgttgatcagaatctcctttatcatctccaaaatcaacaatc |
83 |
Q |
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| T |
38146610 |
caaactctcatctcaaccttcctttgttgataagaatctcctctatttattccaaaatcaacaatc |
38146675 |
T |
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