View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3234_low_26 (Length: 318)
Name: NF3234_low_26
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_low_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 9 - 302
Target Start/End: Original strand, 11732176 - 11732469
Alignment:
| Q |
9 |
agcacagatcatgttctttgaatcccacatctgctgagtcaattctggtacagtcaaagcacgatattgctgggatcctcttgatgtcaagggtgcaaac |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11732176 |
agcacacatcatgttctttgaatcccacatctgctgagtcaattctggtacagtcaaagcacgatattgctgggatcctcttgatgtcaagggtgcaaac |
11732275 |
T |
|
| Q |
109 |
ccaaccatgaagaaatggagccgagggaatgggataagattgacagcaagcttacgaagatcagagttcagttgtccagggaaacgtagacaacaagtaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11732276 |
ccaaccatgaagaaatggagccgagggaatgggataagattgacagcaagcttacgaagatcagagttcagttgtccagggaaacgtagacaacaagtaa |
11732375 |
T |
|
| Q |
209 |
ctccactcatggtggcagaaatgaggtggttaaggtcaccaactgaaataatcaaatcaagaaaaagaagttgaaaattgaacttccaactaaa |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11732376 |
ctccactcatggtggcagaaatgaggtggttaaggtcaccaactgaaataatcaaatcaagaaaaagaagttgaaaattgaacttccaactaaa |
11732469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 117
Target Start/End: Complemental strand, 38700641 - 38700602
Alignment:
| Q |
78 |
ctgggatcctcttgatgtcaagggtgcaaacccaaccatg |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38700641 |
ctgggatcctcttgatgtcaagggtgcgaacccaaccatg |
38700602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 226
Target Start/End: Complemental strand, 38700602 - 38700564
Alignment:
| Q |
188 |
ggaaacgtagacaacaagtaactccactcatggtggcag |
226 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
38700602 |
ggaaacatagacaacaagtaactccactcatggtagcag |
38700564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 156; Significance: 7e-83; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 16 - 259
Target Start/End: Original strand, 38177327 - 38177570
Alignment:
| Q |
16 |
atcatgttctttgaatcccacatctgctgagtcaattctggtacagtcaaagcacgatattgctgggatcctcttgatgtcaagggtgcaaacccaacca |
115 |
Q |
| |
|
||||| ||||| | |||||||||||||||||||||||| || |||| ||| || || || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38177327 |
atcatattcttagcatcccacatctgctgagtcaattcaggcacagacaagttgcggtactgttgggatcctcttgatgtcaagggtgcaaacccaacca |
38177426 |
T |
|
| Q |
116 |
tgaagaaatggagccgagggaatgggataagattgacagcaagcttacgaagatcagagttcagttgtccagggaaacgtagacaacaagtaactccact |
215 |
Q |
| |
|
| ||||||||||| ||||||||||||||||| |||||||||||||| | ||||||||||||||| || |||||||||||||||||||||||||||||||| |
|
|
| T |
38177427 |
taaagaaatggagacgagggaatgggataaggttgacagcaagctttctaagatcagagttcagctgcccagggaaacgtagacaacaagtaactccact |
38177526 |
T |
|
| Q |
216 |
catggtggcagaaatgaggtggttaaggtcaccaactgaaataa |
259 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38177527 |
catggtagcagaaatgaggtggttaaggtcaccaactgcaataa |
38177570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 5921536 - 5921718
Alignment:
| Q |
9 |
agcacagatcatgttctttgaatcccacatctgctgagtcaattctggtacagtcaaagcacgatattgctgggatcctcttgatgtcaagggtgcaaac |
108 |
Q |
| |
|
|||||| ||||| ||||| ||||||||||| |||||||| | ||||||||| |||||||||| || ||||| || |||||||| ||||| |||||||| |
|
|
| T |
5921536 |
agcacacatcatattcttggaatcccacatttgctgagtgagctctggtacactcaaagcacggtactgctgagaacctcttgaagtcaaaggtgcaaaa |
5921635 |
T |
|
| Q |
109 |
ccaaccatgaagaaatggagccgagggaatgggataagattgacagcaagcttacgaagatcagagttcagttgtccagggaa |
191 |
Q |
| |
|
|| | |||||| || || || ||||||||||| || ||||| ||||||||||| | ||||| ||||| || || |||||||| |
|
|
| T |
5921636 |
cccaacatgaaaaagtgaagacgagggaatggaatgagattcacagcaagcttcctcagatcggagtttagctgaccagggaa |
5921718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 191
Target Start/End: Original strand, 5934996 - 5935178
Alignment:
| Q |
9 |
agcacagatcatgttctttgaatcccacatctgctgagtcaattctggtacagtcaaagcacgatattgctgggatcctcttgatgtcaagggtgcaaac |
108 |
Q |
| |
|
|||||| ||||||||||| ||||||||||| ||||| || | ||||| ||| ||||||| | || ||||| || |||||||| ||||| ||||||||| |
|
|
| T |
5934996 |
agcacacatcatgttcttggaatcccacatttgctgtgtgatctctggaacactcaaagccctgtactgctgagaacctcttgaagtcaaaggtgcaaac |
5935095 |
T |
|
| Q |
109 |
ccaaccatgaagaaatggagccgagggaatgggataagattgacagcaagcttacgaagatcagagttcagttgtccagggaa |
191 |
Q |
| |
|
|| | |||||| || ||||| ||||||||||| | ||||| || |||||||| | |||||| |||||||| || |||||||| |
|
|
| T |
5935096 |
cctaacatgaaaaagtggaggcgagggaatggaaccagattcactgcaagcttcctaagatcggagttcagctgaccagggaa |
5935178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 191
Target Start/End: Complemental strand, 5532412 - 5532315
Alignment:
| Q |
94 |
gtcaagggtgcaaacccaaccatgaagaaatggagccgagggaatgggataagattgacagcaagcttacgaagatcagagttcagttgtccagggaa |
191 |
Q |
| |
|
||||| || ||||| || |||||||| || || || || |||||||| || ||||| ||||||||||| | ||||||||||||||| || |||||||| |
|
|
| T |
5532412 |
gtcaaaggagcaaatcccaccatgaaaaagtgaagacgcgggaatggaatgagattcacagcaagcttcctaagatcagagttcagctgaccagggaa |
5532315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 253
Target Start/End: Complemental strand, 34841566 - 34841322
Alignment:
| Q |
9 |
agcacagatcatgttctttgaatcccacatctgctgagtcaattctggtacagtcaaagcacgatattgctgggatcctcttgatgtcaagggtgcaaac |
108 |
Q |
| |
|
|||||| |||||||| || ||||||||||||||||| || | |||||| |||||||| ||||| |||||||| || || | ||||| | || ||||| |
|
|
| T |
34841566 |
agcacacatcatgtttttggaatcccacatctgctgggtgagttctggaacagtcaatgcacggtattgctgagagccacgggatgtaagaggagcaaaa |
34841467 |
T |
|
| Q |
109 |
ccaaccatgaagaaatggagccgagggaatgggataagattgacagcaagcttacgaagatcagagttcagttgtccagggaaacgtagacaacaagtaa |
208 |
Q |
| |
|
|||||||||||||| || || |||||||||||||| ||||| || || || || || ||||||||||| ||||| || |||||||| || || ||||| | |
|
|
| T |
34841466 |
ccaaccatgaagaagtgcaggcgagggaatgggatgagattcactgccagtttccggagatcagagttgagttgacccgggaaacgaaggcagcaagtca |
34841367 |
T |
|
| Q |
209 |
ctccactcatggtggcagaaatgaggtggttaaggtcaccaactg |
253 |
Q |
| |
|
||||||||||||| || || || | |||||| | ||||||||||| |
|
|
| T |
34841366 |
ctccactcatggttgctgagatcaagtggttcaagtcaccaactg |
34841322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 45452745 - 45452982
Alignment:
| Q |
16 |
atcatgttctttgaatcccacatctgctgagtcaattctggtacagtcaaagcacgatattgctgggatcctcttgatgtcaagggtgcaaacccaacca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| || |||||||| | ||| | || ||||| || || | || || | || ||||| || |||| |
|
|
| T |
45452745 |
atcatgttctttgaatcccacatctgctgggtcagctcaggtacagtaagagctctgtactgctgtgaaccacgagaagtgagtggggcaaatcccacca |
45452844 |
T |
|
| Q |
116 |
tgaagaaatggagccgagggaatgggataagattgacagcaagcttacgaagatcagagttcagttgtccagggaaacgtagacaacaagtaactccact |
215 |
Q |
| |
|
|||||||||| | |||||||| || || |||||||| || | || |||||||| ||||||| ||| |||||||| || |||||||| ||||| ||||| |
|
|
| T |
45452845 |
tgaagaaatgcaaacgagggaaaggaatgagattgactgccaatttgcgaagatctgagttcaattgaccagggaatcgaagacaacatgtaacaccact |
45452944 |
T |
|
| Q |
216 |
catggtggcagaaatgaggtggttaaggtcaccaactg |
253 |
Q |
| |
|
||| ||||||||||| || ||||| || || ||||||| |
|
|
| T |
45452945 |
cattgtggcagaaattagatggttcagatctccaactg |
45452982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 253
Target Start/End: Original strand, 53146423 - 53146576
Alignment:
| Q |
100 |
ggtgcaaacccaaccatgaagaaatggagccgagggaatgggataagattgacagcaagcttacgaagatcagagttcagttgtccagggaaacgtagac |
199 |
Q |
| |
|
||||||||||||||||| || || || || || ||||||||||| ||||||||||| ||||| | ||||||||||||| ||||||||| || | |||| |
|
|
| T |
53146423 |
ggtgcaaacccaaccataaaaaagtgaagacgtgggaatgggatcagattgacagccagcttcctgagatcagagttcaattgtccaggaaacctcagac |
53146522 |
T |
|
| Q |
200 |
aacaagtaactccactcatggtggcagaaatgaggtggttaaggtcaccaactg |
253 |
Q |
| |
|
|||| ||||| |||||||| || || ||||| || ||||| || || ||||||| |
|
|
| T |
53146523 |
aacaggtaaccccactcatagttgcggaaatcagatggttcagatccccaactg |
53146576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University