View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3234_low_27 (Length: 313)

Name: NF3234_low_27
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3234_low_27
NF3234_low_27
[»] chr4 (12 HSPs)
chr4 (15-313)||(2625267-2625553)
chr4 (43-93)||(2525947-2525997)
chr4 (43-93)||(5035812-5035862)
chr4 (43-92)||(2536682-2536731)
chr4 (43-98)||(2467676-2467731)
chr4 (49-91)||(2547613-2547655)
chr4 (214-254)||(2393696-2393736)
chr4 (50-93)||(2491264-2491307)
chr4 (49-95)||(2360928-2360974)
chr4 (43-93)||(5101951-5102001)
chr4 (43-88)||(2380052-2380097)
chr4 (49-93)||(2477716-2477760)
[»] chr1 (1 HSPs)
chr1 (216-251)||(15838059-15838094)


Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 15 - 313
Target Start/End: Original strand, 2625267 - 2625553
Alignment:
Q  15 ggcggcagcaacaacataaaa-gaagtgagttcagatttaccagaggagttatgggaacacatcttcaaattcctcaacggcaacaaaagccactacttc 113  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2625267 ggcggcagcaacaacaaaaaaagaagtgagttcagatttaccagaggagttatgggaacacatcttcaaattcctcaacgacaacaaaagccactacttc 2625366  T
Q  114 aaatctctctcgctcgtcttcaaacattatctctccatttccaactgtctcctacgtgcgtgacctaaaagtctatgatcataccctccatcaccttccc 213  Q
    |||||||||||||| |||| |||||||| ||||||||| |||||||||||||||    |||||||||||||||||||||||||||||||||||           
T  2625367 aaatctctctcgctagtctccaaacattttctctccatctccaactgtctccta----cgtgacctaaaagtctatgatcataccctccatca------- 2625455  T
Q  214 cgcctcttccaaaggttccctaacctcacatctctcgatcttagcatcgtctccaaaagagttgacttctacacaattcttacccaaatctccactttcc 313  Q
      |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2625456 --cctcttccaaaggttccctaacctcacatccctcgatcttagcatcgtctccaaaagagttgacttctacacaattcttacccaaatctccactttcc 2625553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 2525997 - 2525947
Alignment:
Q  43 gttcagatttaccagaggagttatgggaacacatcttcaaattcctcaacg 93  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2525997 gttcatatttaccagaggagttatgggaacacatcttcaaattcctcaacg 2525947  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 43 - 93
Target Start/End: Complemental strand, 5035862 - 5035812
Alignment:
Q  43 gttcagatttaccagaggagttatgggaacacatcttcaaattcctcaacg 93  Q
    ||||| ||||||||||||| ||||||||| |||||||||||||||||||||    
T  5035862 gttcaaatttaccagaggatttatgggaaaacatcttcaaattcctcaacg 5035812  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 92
Target Start/End: Complemental strand, 2536731 - 2536682
Alignment:
Q  43 gttcagatttaccagaggagttatgggaacacatcttcaaattcctcaac 92  Q
    ||||| ||||||||||||||||||||||| ||||||||||||| ||||||    
T  2536731 gttcatatttaccagaggagttatgggaatacatcttcaaatttctcaac 2536682  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 43 - 98
Target Start/End: Complemental strand, 2467731 - 2467676
Alignment:
Q  43 gttcagatttaccagaggagttatgggaacacatcttcaaattcctcaacggcaac 98  Q
    ||||| |||||||| ||||||||||||| | |||||||||||||||||||| ||||    
T  2467731 gttcatatttaccaaaggagttatgggagcgcatcttcaaattcctcaacgacaac 2467676  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 91
Target Start/End: Complemental strand, 2547655 - 2547613
Alignment:
Q  49 atttaccagaggagttatgggaacacatcttcaaattcctcaa 91  Q
    |||||||||| ||||||||||| ||||||||||||||||||||    
T  2547655 atttaccagatgagttatgggagcacatcttcaaattcctcaa 2547613  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 254
Target Start/End: Original strand, 2393696 - 2393736
Alignment:
Q  214 cgcctcttccaaaggttccctaacctcacatctctcgatct 254  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  2393696 cgcctcttcctaaggttccctaacctcacatcactcgatct 2393736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 2491307 - 2491264
Alignment:
Q  50 tttaccagaggagttatgggaacacatcttcaaattcctcaacg 93  Q
    |||||||||| ||||||||||||||||| |||||||||| ||||    
T  2491307 tttaccagagaagttatgggaacacatcctcaaattcctgaacg 2491264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 95
Target Start/End: Original strand, 2360928 - 2360974
Alignment:
Q  49 atttaccagaggagttatgggaacacatcttcaaattcctcaacggc 95  Q
    |||||||||| ||| |||||||||||||| |||||||||||| ||||    
T  2360928 atttaccagatgagctatgggaacacatcatcaaattcctcagcggc 2360974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 93
Target Start/End: Original strand, 5101951 - 5102001
Alignment:
Q  43 gttcagatttaccagaggagttatgggaacacatcttcaaattcctcaacg 93  Q
    ||||| ||||||| || ||||||||||| | ||||||||||||||||||||    
T  5101951 gttcatatttaccggatgagttatgggagcgcatcttcaaattcctcaacg 5102001  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 2380052 - 2380097
Alignment:
Q  43 gttcagatttaccagaggagttatgggaacacatcttcaaattcct 88  Q
    ||||| |||||||||| |||||||||||| ||||| ||||||||||    
T  2380052 gttcaaatttaccagatgagttatgggaatacatcatcaaattcct 2380097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 93
Target Start/End: Complemental strand, 2477760 - 2477716
Alignment:
Q  49 atttaccagaggagttatgggaacacatcttcaaattcctcaacg 93  Q
    |||||||||||||||| |||||   ||||||||||||||||||||    
T  2477760 atttaccagaggagttgtgggagggcatcttcaaattcctcaacg 2477716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 15838059 - 15838094
Alignment:
Q  216 cctcttccaaaggttccctaacctcacatctctcga 251  Q
    |||||||||||||||||||||||| |||||||||||    
T  15838059 cctcttccaaaggttccctaacctaacatctctcga 15838094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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