View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_low_28 (Length: 306)
Name: NF3234_low_28
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 1139188 - 1139481
Alignment:
| Q |
1 |
caatccaccacctgattattcacattaatctccaatactattaaccaacatctcaaaaacatcatatgaccaaaataaccaaaccaatatttctatcaaa |
100 |
Q |
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| T |
1139188 |
caatccaccacctgatttttcacattctcctccaatactactatccaacatctcaaaaacatcatatgaccaaaataaccaaaccaatatttctatcaaa |
1139287 |
T |
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| Q |
101 |
caaaattgttcggctattactcataaccttacttaaaatggattggaagaattattaaagattcctaaggctatgcatgacatgaatgaggatgaattat |
200 |
Q |
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| T |
1139288 |
caaaattgttcggctattactcataaccttacttcaaatggattggaagaattattaaagattcctaaggctatgcatgacatgaatgaggatgaattat |
1139387 |
T |
|
| Q |
201 |
tttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcatgttcttgacaaaaggtcctatttt |
294 |
Q |
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| T |
1139388 |
tttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcatgttcttgacaaaaggtcctatttt |
1139481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 1135980 - 1136270
Alignment:
| Q |
1 |
caatccaccacctgattattcacattaatctccaatactattaaccaacatctcaaaaacatcatatgaccaaaataaccaaaccaatatttctatcaaa |
100 |
Q |
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||||||||||||| ||| |||| ||| |||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
1135980 |
caatccaccacctcatttttcatattctcctccaatattattatccaacatctcaaaaacatcatatgaccatgataaccaaaccaatatttctatcaaa |
1136079 |
T |
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| Q |
101 |
caaaattgttcggctattactcataaccttacttaaaatggattggaagaattattaaagattcctaaggctatgcatgacatgaatgaggatgaattat |
200 |
Q |
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| T |
1136080 |
caaaattgtccggcta---ctcataaccttacttcaaatggtttggaagaattattaaagattcctaaggctatgcatgacatgaacgaggatgaattat |
1136176 |
T |
|
| Q |
201 |
tttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcatgttcttgacaaaaggtcctatttt |
294 |
Q |
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| T |
1136177 |
tttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcatgttcttgacaaaaggtcctgtttt |
1136270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 75 - 294
Target Start/End: Complemental strand, 54479475 - 54479256
Alignment:
| Q |
75 |
ataaccaaaccaatatttctatcaaacaaaattgttcggctattactcataaccttacttaaaatggattggaagaattattaaagattcctaaggctat |
174 |
Q |
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|||||||||| ||||||||||||||| || |||| | || | ||||| |||||||||||| | |||| ||| |||| || || |||||||||| |||||| |
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| T |
54479475 |
ataaccaaacaaatatttctatcaaaaaatattgcttggttgttactaataaccttacttcacatgggttgaaagacttgttgaagattcctatggctat |
54479376 |
T |
|
| Q |
175 |
gcatgacatgaatgaggatgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcatgttc |
274 |
Q |
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| T |
54479375 |
gcatgacatgaatgaggatgaattgttttggagagcttcattggaacctatgattcataaaactccattcaaacaaacaccaaaggttgcgtttatgttc |
54479276 |
T |
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| Q |
275 |
ttgacaaaaggtcctatttt |
294 |
Q |
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| T |
54479275 |
ttgacaataggtcctgtttt |
54479256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 129 - 285
Target Start/End: Complemental strand, 31269290 - 31269134
Alignment:
| Q |
129 |
ttacttaaaatggattggaagaattattaaagattcctaaggctatgcatgacatgaatgaggatgaattattttggagagcttcattggctcctatgat |
228 |
Q |
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|||||| |||||| ||||| ||||| || |||||||| | |||||||||||| |||||||| || |||||||||||||||||||| || ||||||||| |
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| T |
31269290 |
ttacttcaaatgggttggaggaatttttgaagattccaatggctatgcatgatatgaatgaagaggaattattttggagagcttcgatgattcctatgat |
31269191 |
T |
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| Q |
229 |
tcataaaactccatttaaacaaacaccaaaggttgcattcatgttcttgacaaaagg |
285 |
Q |
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||||||| ||||||| ||||||| ||||||||||||||| ||||| ||||| ||||| |
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| T |
31269190 |
tcataaacctccattcaaacaaataccaaaggttgcatttatgtttttgaccaaagg |
31269134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 288
Target Start/End: Complemental strand, 48324581 - 48324469
Alignment:
| Q |
176 |
catgacatgaatgaggatgaattattttggagagcttcattggctcctatgattcataaaactccatttaaacaaacaccaaaggttgcattcatgttct |
275 |
Q |
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||||| ||||| || |||||||| ||| | ||| |||| ||| | |||||||||| || |||| || || |||||||||||| |||| || ||||| | |
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| T |
48324581 |
catgatatgaacgatgatgaattgtttcgaagaacttcgttgatttctatgattcacgaacctccgttcaatcaaacaccaaagattgcctttatgtttt |
48324482 |
T |
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| Q |
276 |
tgacaaaaggtcc |
288 |
Q |
| |
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| T |
48324481 |
tgacaaaaggtcc |
48324469 |
T |
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