View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_low_29 (Length: 304)
Name: NF3234_low_29
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_low_29 |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 16078505 - 16078717
Alignment:
| Q |
5 |
tgtcgaagaatatagaaagagagaagactgttggtaatgttactagtgaggtatgtattgtttatgtgaaatgatatcgataaaatcattttgaaacaac |
104 |
Q |
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| T |
16078505 |
tgtcaaagtatatagaaagagagaagactgttggtaatgttattagtgaggtatgtgttgtttatgtgaaatgatatcgataaaatcattttgaaacaac |
16078604 |
T |
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| Q |
105 |
tttaaaaaatannnnnnnattggaaaaaaacaatagagtgtgaaatagggatagagnnnnnnnnnnnnnnnttgtttatgtcatgtggtcaaaattacaa |
204 |
Q |
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| T |
16078605 |
tttaaaaa-tatttttttattggaaaaaaacaat--agtgtgaaataaggatagag-aaaaaaagtaaaaattgtttatgtcatgtggtcaaaattacaa |
16078700 |
T |
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| Q |
205 |
ttgagataccataaaaa |
221 |
Q |
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||||||||||||||||| |
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| T |
16078701 |
ttgagataccataaaaa |
16078717 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 187 - 288
Target Start/End: Original strand, 16068297 - 16068397
Alignment:
| Q |
187 |
atgtggtcaaaattacaattgagataccataaaaaatattattgctatcataattaattgcacctctaaactacaattacatatatgcc-ttttattttt |
285 |
Q |
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| T |
16068297 |
atgtggtcaaaatgacaattgagataccat-aaaaatactattgctatcacaattaa-tgcagctataaactacaattacatatatgcctttttattttt |
16068394 |
T |
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| Q |
286 |
ctt |
288 |
Q |
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||| |
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| T |
16068395 |
ctt |
16068397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 221
Target Start/End: Complemental strand, 13014 - 12969
Alignment:
| Q |
176 |
ttgtttatgtcatgtggtcaaaattacaattgagataccataaaaa |
221 |
Q |
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| T |
13014 |
ttgtttatgtcatatggtcaaaattacaattgaggtaccttaaaaa |
12969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 12721128 - 12721173
Alignment:
| Q |
176 |
ttgtttatgtcatgtggtcaaaattacaattgagataccataaaaa |
221 |
Q |
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| T |
12721128 |
ttgtttatgtcatatggtcaaaattacaattgaggtaccttaaaaa |
12721173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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