View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_low_3 (Length: 565)
Name: NF3234_low_3
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 276 - 551
Target Start/End: Original strand, 7078253 - 7078528
Alignment:
| Q |
276 |
tgtgatgaatcaaatccagaaatattagcagattgcttcaaagcagatctccaccttagcaccttgtaagaactataattttgttcatgttgagcaaaag |
375 |
Q |
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| T |
7078253 |
tgtgatgaatcaaatccagaaatatttgcagattgcttcaaagcagatctccaccttagaaccttgtaagaactataattttgttcatgttgagcaaaag |
7078352 |
T |
|
| Q |
376 |
catctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccatatttttctctacactcaactat |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7078353 |
catctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccatatttttctctacactcaactat |
7078452 |
T |
|
| Q |
476 |
tttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaacgaaatgaatgatttt |
551 |
Q |
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| T |
7078453 |
tttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaatgaaatgaatgatttt |
7078528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 277 - 551
Target Start/End: Complemental strand, 7028974 - 7028700
Alignment:
| Q |
277 |
gtgatgaatcaaatccagaaatattagcagattgcttcaaagcagatctccaccttagcaccttgtaagaactataattttgttcatgttgagcaaaagc |
376 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |
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| T |
7028974 |
gtgatgaatcaaatccagacatattagcagattgcttcaaagcagatctccagcttagcaccttgtaggaactatacttttgttcatgttgagcaaaagc |
7028875 |
T |
|
| Q |
377 |
atctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccatatttttctctacactcaactatt |
476 |
Q |
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| T |
7028874 |
atctctataagtcccattttgatgccgtacatctgagggatatacttggtagaaaactggcattagaaccctaccataatttgctctgcactcgactatt |
7028775 |
T |
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| Q |
477 |
ttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaacgaaatgaatgatttt |
551 |
Q |
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| T |
7028774 |
ttcacaagctcgtccaaacaccaatgtgaagatgcaaagtttggagaaaatatgaccaatgaaatcaatgatttt |
7028700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 7077992 - 7078187
Alignment:
| Q |
16 |
ataggtagaactttagatcggtcaaacaaacatagatctccataatataaactctcataaatcactaataaggtagtttaataacaacttagatcggtca |
115 |
Q |
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| T |
7077992 |
ataggtagaactt-agaccggtcaaacaaacttagatctccataatataatctctcataaatcactaataaggtagtttaataacaacttagatcggtca |
7078090 |
T |
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| Q |
116 |
aacaaacaacatccttgtttagtttcgatattgtagaactttggagaagcagaaaaa-agatgaagagacacattaacttttttaatttgttcaatc |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7078091 |
aacaaacaacatccttgtttagtttcgatattgtagaactttggagaagcagaaaaagagatgaagagacacattaacttttttaatttgttcaatc |
7078187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 276 - 551
Target Start/End: Complemental strand, 7035677 - 7035402
Alignment:
| Q |
276 |
tgtgatgaatcaaatccagaaatattagcagattgcttcaaagcagatctccaccttagcaccttgtaagaactataattttgttcatgttgagcaaaag |
375 |
Q |
| |
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|||||||||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||| | || |||| |||||||||||||||||||||| |
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| T |
7035677 |
tgtgatgaatcaaatccagacatattggcagattgcttcaaagcatatctccaacttagcaccttattcaaattatacttttgttcatgttgagcaaaag |
7035578 |
T |
|
| Q |
376 |
catctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccatatttttctctacactcaactat |
475 |
Q |
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||||||||||| |||||||||| | || |||| ||| |||||||||||||||||||||||||| ||||||||| ||||| ||| |||| ||||| ||||| |
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| T |
7035577 |
catctctataactcccattttgatgccgtacatctgagggctctacttggtagaaaactggcaatagaatcctgccataatttgctctgcactcgactat |
7035478 |
T |
|
| Q |
476 |
tttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaacgaaatgaatgatttt |
551 |
Q |
| |
|
|||||||||||| |||| |||||||| |||||||||||||||||| || ||||| ||||| ||||| ||||||||| |
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| T |
7035477 |
tttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatcaatgatttt |
7035402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 281 - 551
Target Start/End: Complemental strand, 7021367 - 7021097
Alignment:
| Q |
281 |
tgaatcaaatccagaaatattagcagattgcttcaaagcagatctccaccttagcaccttgtaagaactataattttgttcatgttgagcaaaagcatct |
380 |
Q |
| |
|
||||| ||||||||||||||| ||||||| |||||||| ||||||| || |||||||| |||||| |||||||| || ||||| ||||||||||| |
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| T |
7021367 |
tgaatgaaatccagaaatattggcagattttgtcaaagcatgtctccacttttccaccttgtcggaactaaaattttgtccaagttgaacaaaagcatct |
7021268 |
T |
|
| Q |
381 |
ctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccatatttttctctacactcaactattttca |
480 |
Q |
| |
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||||| ||| |||| | | ||| |||| || |||||||||||||||||||||| |||||||||| |||||||| |||| || ||||||||||||| |
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| T |
7021267 |
ttataagcaccagtttgatgtcgtacttctgtaggatctacttggtagaaaactggcaatagaatcctatcatattttgctctgcaatcaactattttca |
7021168 |
T |
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| Q |
481 |
caagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaacgaaatgaatgatttt |
551 |
Q |
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||||||| |||| |||||||| |||| ||| |||||||||||||||||| ||||| ||||||||||||| |
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| T |
7021167 |
caagctcatccaaacaccaatgtgaatatgaaaagtttggagagaatatgaccaaatgaatgaatgatttt |
7021097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 354 - 529
Target Start/End: Original strand, 7069807 - 7069982
Alignment:
| Q |
354 |
ttttgttcatgttgagcaaaagcatctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccat |
453 |
Q |
| |
|
||||||||||||| | |||| |||||| |||| | |||||||| | ||| |||| |||||| || |||| ||||||||| |||| || ||| | |||| |
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| T |
7069807 |
ttttgttcatgttcaacaaatgcatctgcataagttccattttgatgcctcacaattgtgggatcaactttgtagaaaacaggcaataaaatgtttccat |
7069906 |
T |
|
| Q |
454 |
atttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatat |
529 |
Q |
| |
|
||| |||||||| ||||| | ||| || ||||| |||| ||||||| ||||||| ||| ||||| |||||||||| |
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| T |
7069907 |
ctttctctctacagtcaacaactttgaccagctcatccaaacaccaagatgaagaagcatagttttgagagaatat |
7069982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 354 - 529
Target Start/End: Original strand, 7086873 - 7087048
Alignment:
| Q |
354 |
ttttgttcatgttgagcaaaagcatctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccat |
453 |
Q |
| |
|
||||||||||||| ||||| |||| | |||| |||| || || | ||| |||||||| || || |||| ||| ||||| |||| || |||| |||| |
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| T |
7086873 |
ttttgttcatgttctgcaaatgcatttgcataagtccccttctgatgcctcacaactgtagggtcaactttgtaaaaaacaggcaataaaatctgtccat |
7086972 |
T |
|
| Q |
454 |
atttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatat |
529 |
Q |
| |
|
||| |||||||||||||| ||||| |||||||| |||| |||||| | |||||| ||| ||||| |||||||||| |
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| T |
7086973 |
ctttctctctacactcaacaattttgacaagctcatccaaacaccattttgaagaagcatagttttgagagaatat |
7087048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 329
Target Start/End: Original strand, 7100407 - 7100460
Alignment:
| Q |
276 |
tgtgatgaatcaaatccagaaatattagcagattgcttcaaagcagatctccac |
329 |
Q |
| |
|
|||||||||| ||| ||||| |||| ||||||| ||||||||||||||||||| |
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|
| T |
7100407 |
tgtgatgaatgaaaaccagagatatctgcagatttcttcaaagcagatctccac |
7100460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 450 - 548
Target Start/End: Original strand, 4003257 - 4003355
Alignment:
| Q |
450 |
ccatatttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaacgaaatgaatgat |
548 |
Q |
| |
|
|||||||| ||| | ||||||| |||||||||||| || || | |||||||| |||||| ||| ||||| |||||||| ||||| |||||||||||| |
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| T |
4003257 |
ccatatttctctttgcactcaattattttcacaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatatgaccaatgaaatgaatgat |
4003355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 542
Target Start/End: Original strand, 3811963 - 3812040
Alignment:
| Q |
465 |
cactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaacgaaatg |
542 |
Q |
| |
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||||||| ||||||||||||||| || | |||||||| |||||| ||| ||||| |||||||| ||||| |||||| |
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| T |
3811963 |
cactcaattattttcacaagctcatctaaacaccaatgtgaagaagcatagttttctgagaatatgaccaatgaaatg |
3812040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 548
Target Start/End: Complemental strand, 3916105 - 3916008
Alignment:
| Q |
451 |
catatttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaacgaaatgaatgat |
548 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| || | | |||||||| |||| | ||| ||||| |||||||| | ||| |||||||||||| |
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|
| T |
3916105 |
catatttctctttacactcaactattttcacaagttcttttaaacaccaatgtgaacaagcatagttttctgagaatatgatcaatgaaatgaatgat |
3916008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 450 - 542
Target Start/End: Original strand, 3821521 - 3821613
Alignment:
| Q |
450 |
ccatatttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaacgaaatg |
542 |
Q |
| |
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|||||||| ||| | ||||| | ||||||||||||||| || | |||||||| |||||| ||| ||||| |||||||| ||||| |||||| |
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| T |
3821521 |
ccatatttctctttgcactcgattattttcacaagctcatctaaacaccaatgtgaagaagcatagttttttgagaatatgaccaatgaaatg |
3821613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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