View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_low_30 (Length: 303)
Name: NF3234_low_30
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 14 - 287
Target Start/End: Complemental strand, 43418585 - 43418312
Alignment:
| Q |
14 |
agacagagacacaaaaaggatgtaacagtaatcggatatatcctcaatcaaaaggttcactgaatgttacttttgttggtttggagtgttgtttgtatca |
113 |
Q |
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| T |
43418585 |
agacagagacgcaaaaaggatgtaacagtaatcggatatatcctcaatcaaaaggttcactgaatgttacttttgttggtttggagtgttgtttgtatca |
43418486 |
T |
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| Q |
114 |
tcaatcatcatgtctatgctggtgccccaattattattatttggtcatttcgttttccaggtttgcaaacaaggatcaatgcatttggataaaattttga |
213 |
Q |
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| T |
43418485 |
tcaatcatcatgtctatgctggtgccccaattattattatttggtcatttcgttttccaggtttgcaaacaaggatcaatgcatttggataaaattttga |
43418386 |
T |
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| Q |
214 |
tggacacaacaaaagttgggtttagttggcaatgatagatagctgctttcaataaaatcagtggatactttctg |
287 |
Q |
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| T |
43418385 |
tggacacaacaaaagttgggtttagtgggcaatgatagatagctgctttcaataaaatcagtggatactttctg |
43418312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 195 - 279
Target Start/End: Complemental strand, 43406519 - 43406435
Alignment:
| Q |
195 |
catttggataaaattttgatggacacaacaaaagttgggtttagttggcaatgatagatagctgctttcaataaaatcagtggat |
279 |
Q |
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| T |
43406519 |
catttagataaaattttggcggccataacaaaagttgggattagtgggcaatcatagctagctgctttcaataaaatcagtggat |
43406435 |
T |
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