View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_low_35 (Length: 283)
Name: NF3234_low_35
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 5e-59; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 149 - 276
Target Start/End: Original strand, 8758429 - 8758556
Alignment:
| Q |
149 |
ttctttaactagattagaagcctgtgcttcttgctttgaaagcttcagtgcctcttcttccatcttcttagttgttgcagcaacttcgcgttccttttca |
248 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8758429 |
ttctttagctagattagaagcctgtgcttcttgctttgaaagcttcagtgcctcttcttccatcttcttagttgttgcagcagcttcgcgttccttttca |
8758528 |
T |
|
| Q |
249 |
gcttccactcttgcctcttcctttgctt |
276 |
Q |
| |
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|||||||||||| ||||||||||||||| |
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| T |
8758529 |
gcttccactctttcctcttcctttgctt |
8758556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 18 - 139
Target Start/End: Original strand, 8758276 - 8758396
Alignment:
| Q |
18 |
tgttgcacctttggtttctcatcctcatcaggattttgatttgttgtagcaacctgtgggcttaacttttgccttgaaaccctgcacgaaaagctttagc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8758276 |
tgttgcacctttggtttctcatcctcatcaggattttgatttgttgtagcaacctgtgggcttaacttttgccttgaaaccctgcacg-aaagctttagc |
8758374 |
T |
|
| Q |
118 |
cttgttcaaaatgtcttctacc |
139 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
8758375 |
cttgttcaaaatgtcttctacc |
8758396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 149 - 276
Target Start/End: Complemental strand, 24213527 - 24213400
Alignment:
| Q |
149 |
ttctttaactagattagaagcctgtgcttcttgctttgaaagcttcagtgcctcttcttccatcttcttagttgttgcagcaacttcgcgttccttttca |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| |
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| T |
24213527 |
ttctttaactagattagaagcctgtgcttcttgctttgaaagcttcagtgcctcttcttccagcttcttagttgttgcagcagcttcgcgtgccttttca |
24213428 |
T |
|
| Q |
249 |
gcttccactcttgcctcttcctttgctt |
276 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
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|
| T |
24213427 |
gcttccactcttgcctcttcctctgctt |
24213400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 24213682 - 24213560
Alignment:
| Q |
18 |
tgttgcacctttggtttctcatcctcatcaggattttgatttgttgtagcaacctgtgggcttaacttttgccttg-aaaccctgcacgaaaagctttag |
116 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |
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| T |
24213682 |
tgttgcaactttggtttctcatcctcatcaggattttgatttgttgtagcaacctgtgagcttaacttttgccttgaaaaccctgcacgaaaagctttag |
24213583 |
T |
|
| Q |
117 |
ccttgttcaaaatgtcttctacc |
139 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
24213582 |
ccttgttcaaaatgtcttctacc |
24213560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 119
Target Start/End: Complemental strand, 24213782 - 24213682
Alignment:
| Q |
20 |
ttgcacctttggtttctcatcctcatcaggattttgatttgttgtagcaacctgtgggcttaacttttgccttg-aaaccctgcacgaaaagctttagcc |
118 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||| ||| |||||||||||||| ||| ||||||| || || ||||||||||| |||| |||| ||| |
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|
| T |
24213782 |
ttgcacctttgggctctcatcctcatcaggcttttggattgctgtagcaacctgtgagctgaactttttccatgaaaaccctgcaccaaaaccttttgcc |
24213683 |
T |
|
| Q |
119 |
t |
119 |
Q |
| |
|
| |
|
|
| T |
24213682 |
t |
24213682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 95
Target Start/End: Original strand, 8758174 - 8758249
Alignment:
| Q |
20 |
ttgcacctttggtttctcatcctcatcaggattttgatttgttgtagcaacctgtgggcttaacttttgccttgaa |
95 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| ||| ||||||||||| || | | |||||||||| |||| |
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|
| T |
8758174 |
ttgcacctttgggttctcatcctcatcaggcttttggattgctgtagcaacctttgagttgaacttttgccatgaa |
8758249 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 41878764 - 41878645
Alignment:
| Q |
18 |
tgttgcacctttggtttctcatcctcatcaggattttgatttgttgtagcaacctgtgggcttaacttttgccttgaaaccctgcacgaaaagctttagc |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41878764 |
tgttgcaactttggtttctcatcctcatcaggattttgatttgttgtagcaacctgtgtgcttaacttttgccttgaaaccctgcacgaaaagctttagc |
41878665 |
T |
|
| Q |
118 |
cttgttcaaaatgtcttcta |
137 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
41878664 |
cttgttcaaaatgtcttcta |
41878645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 149 - 276
Target Start/End: Complemental strand, 41878610 - 41878483
Alignment:
| Q |
149 |
ttctttaactagattagaagcctgtgcttcttgctttgaaagcttcagtgcctcttcttccatcttcttagttgttgcagcaacttcgcgttccttttca |
248 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
41878610 |
ttctttagctagattagaagcttgtgcttcttgctttgaaagctttagtgcctcttcttccatcttcttagttgttgcagcagcttcgcgttccttttca |
41878511 |
T |
|
| Q |
249 |
gcttccactcttgcctcttcctttgctt |
276 |
Q |
| |
|
|||||||||||||||||||||| ||||| |
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| T |
41878510 |
gcttccactcttgcctcttcctctgctt |
41878483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 41878863 - 41878769
Alignment:
| Q |
20 |
ttgcacctttggtttctcatcctcatcaggattttgatttgttgtagcaacctgtgggcttaacttttgccttg-aaaccctgcacgaaaagcttt |
114 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| ||||| ||| |||||||||||||| ||| ||||||| || || ||||||||||| |||| |||| |
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| T |
41878863 |
ttgcacctttgggttctcatcctcat-aggcttttggattgctgtagcaacctgtgagctgaacttttcccatgaaaaccctgcaccaaaaccttt |
41878769 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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