View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3234_low_39 (Length: 265)

Name: NF3234_low_39
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3234_low_39
NF3234_low_39
[»] chr7 (1 HSPs)
chr7 (134-263)||(43103836-43103965)
[»] chr5 (3 HSPs)
chr5 (134-263)||(27364598-27364726)
chr5 (134-171)||(27365640-27365677)
chr5 (134-171)||(22778251-22778288)
[»] chr4 (1 HSPs)
chr4 (134-248)||(1866168-1866282)
[»] chr1 (5 HSPs)
chr1 (134-248)||(10920063-10920177)
chr1 (134-248)||(23818199-23818313)
chr1 (141-227)||(16145326-16145412)
chr1 (132-170)||(28762445-28762483)
chr1 (134-171)||(4929814-4929851)
[»] chr6 (2 HSPs)
chr6 (192-260)||(2127729-2127797)
chr6 (134-171)||(1859798-1859835)
[»] chr2 (2 HSPs)
chr2 (134-182)||(3322916-3322964)
chr2 (134-171)||(13913466-13913503)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 134 - 263
Target Start/End: Original strand, 43103836 - 43103965
Alignment:
Q  134 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 233  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||    
T  43103836 tatcaagtgagaggacattttataatgagagatgagagcattaaattaggaccctaggatcaaattgaaaggtggagatgatatttcacgtaatgtggtg 43103935  T
Q  234 tatgactacctgattgcctttgcttctcca 263  Q
    ||||||||||||||||||||| ||||||||    
T  43103936 tatgactacctgattgcctttccttctcca 43103965  T

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Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 134 - 263
Target Start/End: Original strand, 27364598 - 27364726
Alignment:
Q  134 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 233  Q
    ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||    
T  27364598 tatcaagtgagagtacattttataatgagagatgagagcattaaattaggaccctagg-tcaaattgaaaggtggagatgatatttcacttaatgtggtg 27364696  T
Q  234 tatgactacctgattgcctttgcttctcca 263  Q
    ||||||||||||||||||||| ||||||||    
T  27364697 tatgactacctgattgcctttccttctcca 27364726  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 27365677 - 27365640
Alignment:
Q  134 tatcaagtgagaggacattttataatgaaagatgagag 171  Q
    |||||||||||||||||||||||||||| |||||||||    
T  27365677 tatcaagtgagaggacattttataatgagagatgagag 27365640  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 22778251 - 22778288
Alignment:
Q  134 tatcaagtgagaggacattttataatgaaagatgagag 171  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  22778251 tatcaagtgagaggacatcttataatgagagatgagag 22778288  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 1866282 - 1866168
Alignment:
Q  134 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 233  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||| || ||||||| | || ||||||||||||||| |||||||||||| |    
T  1866282 tatcaagtgagaggacattttataatgagagatgagagcattgaattaggaccgtaggatcaaactgaacggtggagatgatattacacttaatgtgggg 1866183  T
Q  234 tatgactacctgatt 248  Q
    | |||||||||||||    
T  1866182 tgtgactacctgatt 1866168  T

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Target: chr1 (Bit Score: 75; Significance: 1e-34; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 10920177 - 10920063
Alignment:
Q  134 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 233  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||||||| || ||||||| | || ||||||||||||||| |||||||||||| |    
T  10920177 tatcaagtgagaggacattttataatgagagatgagagcattgaattaggaccgtaggatcaaactgaacggtggagatgatattacacttaatgtgggg 10920078  T
Q  234 tatgactacctgatt 248  Q
    | |||||||||||||    
T  10920077 tgtgactacctgatt 10920063  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 23818313 - 23818199
Alignment:
Q  134 tatcaagtgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaatgtggtg 233  Q
    ||||||||||||||| |||||||||||| ||||||||||||| |||||||||| || ||||||| | || ||||||||||||||| |||||||||||| |    
T  23818313 tatcaagtgagaggatattttataatgagagatgagagcattgaattaggaccgtaggatcaaactgaacggtggagatgatattacacttaatgtgggg 23818214  T
Q  234 tatgactacctgatt 248  Q
    | |||||||||||||    
T  23818213 tgtgactacctgatt 23818199  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 16145326 - 16145412
Alignment:
Q  141 tgagaggacattttataatgaaagatgagagcattaaattaggaccctaagatcaaattaaaaggtggagatgatatttcacttaat 227  Q
    ||||||||  ||||||||| | ||||||||||||||| |||| |||||||||| ||  | || ||||||||||||||||||||||||    
T  16145326 tgagaggaggttttataataagagatgagagcattaagttagcaccctaagattaatctgaatggtggagatgatatttcacttaat 16145412  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 170
Target Start/End: Original strand, 28762445 - 28762483
Alignment:
Q  132 tctatcaagtgagaggacattttataatgaaagatgaga 170  Q
    |||||||||||||||||||||||| ||||| ||||||||    
T  28762445 tctatcaagtgagaggacattttagaatgagagatgaga 28762483  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 4929814 - 4929851
Alignment:
Q  134 tatcaagtgagaggacattttataatgaaagatgagag 171  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  4929814 tatcaagtgagaggacatcttataatgagagatgagag 4929851  T

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Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 192 - 260
Target Start/End: Complemental strand, 2127797 - 2127729
Alignment:
Q  192 atcaaattaaaaggtggagatgatatttcacttaatgtggtgtatgactacctgattgcctttgcttct 260  Q
    |||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2127797 atcaaattgaaatgtgaagatgatatttcacttaatgtggtgtatgactacctgattgcctttccttct 2127729  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 1859835 - 1859798
Alignment:
Q  134 tatcaagtgagaggacattttataatgaaagatgagag 171  Q
    |||||||||||||||||||||| ||||| |||||||||    
T  1859835 tatcaagtgagaggacattttaaaatgagagatgagag 1859798  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 182
Target Start/End: Original strand, 3322916 - 3322964
Alignment:
Q  134 tatcaagtgagaggacattttataatgaaagatgagagcattaaattag 182  Q
    |||||||||||||||||||||| ||||| |||||||||  |||||||||    
T  3322916 tatcaagtgagaggacattttaaaatgagagatgagagagttaaattag 3322964  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 171
Target Start/End: Complemental strand, 13913503 - 13913466
Alignment:
Q  134 tatcaagtgagaggacattttataatgaaagatgagag 171  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  13913503 tatcaagtgagaggacatcttataatgagagatgagag 13913466  T

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