View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_low_45 (Length: 250)
Name: NF3234_low_45
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 3 - 116
Target Start/End: Original strand, 38894038 - 38894151
Alignment:
| Q |
3 |
aaatgtcttctttaaattttttaatattgttgcattctcaagatcgaatttgagtaggtaattctattaacctccttgctcctaattaataacttcaaca |
102 |
Q |
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| T |
38894038 |
aaatgtcttctttaactcttttaatattgttgcattctcaagaccggatttaagtaggtaattctattaacctccttgctcctaattaataacttcaaca |
38894137 |
T |
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| Q |
103 |
tcaaaataatccac |
116 |
Q |
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|||||||||||||| |
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| T |
38894138 |
tcaaaataatccac |
38894151 |
T |
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Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 160 - 234
Target Start/End: Original strand, 38894192 - 38894266
Alignment:
| Q |
160 |
gaaaataacaaagaaattaaagacttccatcatgaatacaagatcaaatcaaatccatccgtcgattgatgaact |
234 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38894192 |
gaaaataacaaagaaattaaagactttcatcatgaatacaagatcaaatcaaatccatccgtcgattgatgaact |
38894266 |
T |
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