View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_low_47 (Length: 249)
Name: NF3234_low_47
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 31525111 - 31524873
Alignment:
| Q |
1 |
tgcttgagaggtacatttaatcttgattgatttccatacagtttaggttctaatcaatttagtcacattaataatagttagttctaatcagttgttatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31525111 |
tgcttgagaggtacatttaatcttgattgatttccataaagtttaggttctaatcaatttagtcacattaataattgttagttctaatcagttgttatgt |
31525012 |
T |
|
| Q |
101 |
gttttattcgcagctccactggacctaagattatatcgcttatacattgatattagtttaacctatctgtttgattctgcaggtgttactctatgaatca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
31525011 |
gttttattcgcagctccactggacctaagattatatcgcttatacattgatattagtttaatctatctgtttgattctgcagttgttactctatgaatca |
31524912 |
T |
|
| Q |
201 |
ttttgtgctttgacattggggaagaagactacctctgtg |
239 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |
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| T |
31524911 |
ttttgtgctttgacattggggaagaagactgcctctgtg |
31524873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 33366390 - 33366628
Alignment:
| Q |
1 |
tgcttgagaggtacatttaatcttgattgatttccatacagtttaggttctaatcaatttagtcacattaataatagttagttctaatcagttgttatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33366390 |
tgcttgagaggtacatttaatcttgattgatttccataaagtttaggttctaatcaatttagtcacattaataattgttagttctaatcagttgttatgt |
33366489 |
T |
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| Q |
101 |
gttttattcgcagctccactggacctaagattatatcgcttatacattgatattagtttaacctatctgtttgattctgcaggtgttactctatgaatca |
200 |
Q |
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| T |
33366490 |
gttttatttgcagctccactggacctaagattatatcgcttatacattgatattagtttaatctatctgtttgattctgtagttgttactctatgaatca |
33366589 |
T |
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| Q |
201 |
ttttgtgctttgacattggggaagaagactacctctgtg |
239 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |
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| T |
33366590 |
ttttgtgctttgacattggggaagaagactgcctctgtg |
33366628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 49195068 - 49194830
Alignment:
| Q |
1 |
tgcttgagaggtacatttaatcttgattgatttccatacagtttaggttctaatcaatttagtcacattaataatagttagttctaatcagttgttatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
49195068 |
tgcttgagaggtacatttaatcttgattgatttccataaagtttaggttctaatcaatttagtcacattaataattgttagttctaatcagttgttatgt |
49194969 |
T |
|
| Q |
101 |
gttttattcgcagctccactggacctaagattatatcgcttatacattgatattagtttaacctatctgtttgattctgcaggtgttactctatgaatca |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||| |
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| T |
49194968 |
gttttatttgcagctccactggacctaagattatatcgcttatacattgatattagtttaatctatctgtttgattctgtagttgttactctatgaatca |
49194869 |
T |
|
| Q |
201 |
ttttgtgctttgacattggggaagaagactacctctgtg |
239 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |
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| T |
49194868 |
ttttgtgctttgacattggggaagaagactgcctctgtg |
49194830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 41436949 - 41437031
Alignment:
| Q |
153 |
ttagtttaacctatctgtttgattctgcaggtgttactctatgaatcattttgtgctttgacattggggaagaagactacctc |
235 |
Q |
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||||||||| || |||||||||||||||| |||||| |||| |||||||||| |||||| ||||| |||||||||||||| |
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| T |
41436949 |
ttagtttaatctctctgtttgattctgcatatgttaccatatggatcattttgtcatttgactttgggcaagaagactacctc |
41437031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 235
Target Start/End: Complemental strand, 42934240 - 42934158
Alignment:
| Q |
153 |
ttagtttaacctatctgtttgattctgcaggtgttactctatgaatcattttgtgctttgacattggggaagaagactacctc |
235 |
Q |
| |
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||||||||| || ||||||||||| |||| |||||| |||| |||||||||| |||||| ||||| |||||||| ||||| |
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| T |
42934240 |
ttagtttaatctctctgtttgattatgcatatgttaccatatggatcattttgtcatttgactttgggcaagaagaccacctc |
42934158 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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