View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_low_49 (Length: 238)
Name: NF3234_low_49
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_low_49 |
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Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 2218517 - 2218738
Alignment:
| Q |
2 |
gtgtgtgtgtatcattcgccatgaaacaaaacaaggtaattacactataaacaaaaagaatagtaaaaacggtggactaaacccttccaaagaaacaata |
101 |
Q |
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| T |
2218517 |
gtgtgcgtgtatcattcgccatgaaacaaaacaaggtaattacactataaacaaaaagaatagtaaaaacggtggactaaacccttccaaagaaacaata |
2218616 |
T |
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| Q |
102 |
tacaccaccaatgtgacacaataaatcggttaagcagattgtaaatgggtcagtgaaaaaacagtaacatgagaatgaaaatcactatatagacaacggc |
201 |
Q |
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| T |
2218617 |
tacaccaccaatgtgacacaataaatcggttaagcagattgtaaatgggtcagtgaaaaaacagtaacatgagaatgaaaatcactatacagacaacggt |
2218716 |
T |
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| Q |
202 |
aaaacaacaatacacccacatt |
223 |
Q |
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|||||||||||||||||||||| |
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| T |
2218717 |
aaaacaacaatacacccacatt |
2218738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 116 - 210
Target Start/End: Original strand, 2226149 - 2226242
Alignment:
| Q |
116 |
gacacaataaatcggttaagcagattgtaaatgggtcagtgaaaaaacagtaacatgagaatgaaaatcactatatagacaacggcaaaacaaca |
210 |
Q |
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| T |
2226149 |
gacacaataaaccagttaagcaaattaaaaacgggtcagcgaaaaactaataagat-agaatgaaaatcactatatagacaacggtaaaacaaca |
2226242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 65 - 188
Target Start/End: Complemental strand, 36247381 - 36247254
Alignment:
| Q |
65 |
taaaaacggtggactaaacccttccaaagaaacaatatacaccaccaatgtgacacaataaatcggttaagca----gattgtaaatgggtcagtgaaaa |
160 |
Q |
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| T |
36247381 |
taaaaatggtggactaaacccttccatagaaactatatacaccatcaacataacacaataaatcagttaagcaaattgattgaaaatgggtaagtgaaaa |
36247282 |
T |
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| Q |
161 |
aacagtaacatgagaatgaaaatcacta |
188 |
Q |
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| | |||||| |||||||||||||||| |
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| T |
36247281 |
actaataacataagaatgaaaatcacta |
36247254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 65 - 189
Target Start/End: Original strand, 19180559 - 19180687
Alignment:
| Q |
65 |
taaaaacggtggactaaacccttccaaagaaacaatatacaccaccaatgtgacacaataaatcggttaagca----gattgtaaatgggtcagtgaaaa |
160 |
Q |
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|||||| ||||||||||||||||||| || ||| |||||||||| ||| | |||||||||||| |||||||| |||| ||||||||||||||||| |
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| T |
19180559 |
taaaaatggtggactaaacccttccatagtaaccatatacaccatcaacataacacaataaatcagttaagcaaattgatttaaaatgggtcagtgaaaa |
19180658 |
T |
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| Q |
161 |
aacagtaacatgagaatgaaaatcactat |
189 |
Q |
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| | ||||||||||||||||| |||||| |
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| T |
19180659 |
agtaataacatgagaatgaaaaacactat |
19180687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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