View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_low_5 (Length: 468)
Name: NF3234_low_5
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 111 - 462
Target Start/End: Complemental strand, 24624039 - 24623678
Alignment:
| Q |
111 |
accatttcatgtgttctt-atatagctccaacataaatgaaaatcttcataaagaggaactaaggatgaatgtgaaggttgttagcgcgtacttcagaat |
209 |
Q |
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| T |
24624039 |
accatttcatgggttctttatatagctccaacataaatgaaaatcttcataaagaggaattaaggatgaatgtgaaggttgttagcgcgtacttcagaat |
24623940 |
T |
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| Q |
210 |
ttgatagattattttcttcannnnnnnncttctttttggttatatttaattccctgctatatatcactagtacactatgctagttctaatatgttgcatt |
309 |
Q |
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| T |
24623939 |
ttgatagattattttcttcattttttttcttctttttggttatatttaattccctgctatatatcactagtacactatgctagttctaatatgttgcatt |
24623840 |
T |
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| Q |
310 |
annnnnnnnc------aattcaacttctgtatatt---tagcacagnnnnnnnctctttcaattcggttattaatgtcatcaatcatggcttgtcgttta |
400 |
Q |
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| T |
24623839 |
attttttttctttttcaattcaacttctgtatattagatagcgctgtttttttttctttcaattcggttattaatgtcatcaatcatggcttgtcgttta |
24623740 |
T |
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| Q |
401 |
ttctcacttcacgacattgcttatcaagaggtaagtttcaatttctaactaatgatattgct |
462 |
Q |
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| T |
24623739 |
ttctcacttcacgacattgcttatcaagaggtaaatttcaatttctaactaatgatattgct |
24623678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 24624174 - 24624061
Alignment:
| Q |
1 |
ctagctgcattaattcttctcaccttggacatacaagaagtcttagatacttctgatgaggaaataatttgctattttctgatttatgagcctgttatca |
100 |
Q |
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| T |
24624174 |
ctagctgcattaattcttttcaccttggacatacaagaagtcttagatacttctgatgaggaaataatttgctattttctgatttatgagcctgttatca |
24624075 |
T |
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| Q |
101 |
tggggtgagtacca |
114 |
Q |
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| T |
24624074 |
tggggtaagtacca |
24624061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 9439219 - 9439125
Alignment:
| Q |
20 |
tcaccttggacatacaagaagtcttagatacttctgatgaggaaataatttgctattttctgatttatgagcctgttatcatggggtgagtacca |
114 |
Q |
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| T |
9439219 |
tcaccttggacatacaagaggtcttggacacttctgatgacgaagtaatttgcaatgttctgatttactagcctattataatgaggtgagtacca |
9439125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 9438877 - 9438821
Alignment:
| Q |
173 |
ggatgaatgtgaaggttgttagcgcgtacttcagaatttgatagattattttcttca |
229 |
Q |
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| T |
9438877 |
ggatgaatgtaacggttgttagcgatttcttcataatttgatagattcttttcttca |
9438821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 110
Target Start/End: Complemental strand, 11295158 - 11295117
Alignment:
| Q |
69 |
ttgctattttctgatttatgagcctgttatcatggggtgagt |
110 |
Q |
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| T |
11295158 |
ttgctatgttctgatttatgagcctgttataatgaggtgagt |
11295117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 439
Target Start/End: Complemental strand, 16588101 - 16588033
Alignment:
| Q |
371 |
ttaatgtcatcaatcatggcttgtcgtttattctcacttcacgacattgcttatcaagaggtaagtttc |
439 |
Q |
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| T |
16588101 |
ttaatgtcatctatcattgcttattgtgtcgtctcacttcacgatattgcttaccaagaggtaaatttc |
16588033 |
T |
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