View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_low_6 (Length: 468)
Name: NF3234_low_6
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 425
Target Start/End: Original strand, 9016176 - 9016585
Alignment:
| Q |
18 |
aaataggtcggtatacggaacctacggtcaaacttacgtcaagttggttaaacnnnnnnnnnnnngttaaacaagacacgttagggttatgattaaaatg |
117 |
Q |
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| T |
9016176 |
aaataggtcggtatacggaacctacggtcaaacttacgtcaagttagttaagcttttttttttttgttaaacaagacacgttagggttatgactaaaatg |
9016275 |
T |
|
| Q |
118 |
taatcctatgacaaattacatactttggctttaatttaacttgacctaacctattcctacacttattgttcaacaacttaccaataaaattgaagatcaa |
217 |
Q |
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| T |
9016276 |
taatcctatgacaaattacatactttggctttaatttaacttgacctaacctattcctatacttattgttcaacaacttagcaataaaattgaagatcaa |
9016375 |
T |
|
| Q |
218 |
tttcatgtttctttaattctgctctaattctcccatgtaagtt--nnnnnnnnttcttcaagttaaacctatctaatctttcacttttaaattttaatta |
315 |
Q |
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| T |
9016376 |
tttcatgtttctttaattctgctctaattttcccatgtaagttaaaaaaaaaattctccaagttaaacctatttaatctttcacttttaaattttaatta |
9016475 |
T |
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| Q |
316 |
tcatagagtcatctccatttttattgtatttaataaataaactatgttaaaaagtcctatatcagataagaaatgacatgaactagtgtttataagttag |
415 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9016476 |
tcatagagtcatctccatttttattttatttaataaataaactatgttaaaaagtcctatatcagataagaaatgacatgaactagtgtttataagttag |
9016575 |
T |
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| Q |
416 |
gataattctt |
425 |
Q |
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| T |
9016576 |
gataattctt |
9016585 |
T |
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