View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_low_66 (Length: 211)
Name: NF3234_low_66
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_low_66 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 39458008 - 39458218
Alignment:
| Q |
1 |
catctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccggcaagtcgctaattctgtcta |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39458008 |
catctctttgagaggacgcttgtggttacaacaagtttggttggaagaaaataaagtatttcaaagagaattgaatccggcaagtcgctaattctgtcta |
39458107 |
T |
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| Q |
101 |
ccggcagtgaagattttttcatccttctctttttaagagagggagacgacatcatctttggcaaggtgaggaagatgcatacgatacatctattatttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39458108 |
ccggcagtgaagattttttcatccttctctttttaagagagggagacgacatcatctttggcaaggtgaggaagatgcatacgatacatctattatttat |
39458207 |
T |
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| Q |
201 |
atcgatctaaa |
211 |
Q |
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||||||||||| |
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| T |
39458208 |
atcgatctaaa |
39458218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 39437263 - 39437114
Alignment:
| Q |
1 |
catctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccggcaagtcgctaattctgtcta |
100 |
Q |
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||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||| | |||||||||||||| | ||||||||| || |||| |
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| T |
39437263 |
catctctttgagaggacacttgtggttgcagcaagtttggttggaagaaaatagagtatgtgacacagaattgaatccggtaggtcgctaatcctatcta |
39437164 |
T |
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| Q |
101 |
ccggcagtgaagattttttcatccttctctttttaagagagggagacgacatc |
153 |
Q |
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| T |
39437163 |
c---cttggaagattttctcaaccttctctttttatgtgaggaagacgacatc |
39437114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 39424240 - 39424091
Alignment:
| Q |
1 |
catctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccggcaagtcgctaattctgtcta |
100 |
Q |
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||||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| ||| | |||||||||||||||| |||||| || || |||| |
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| T |
39424240 |
catctttttgagaggacacttgtggttgcagcaagtttggttggaagaaaatagagtatgtgacacagaattgaatccggcaggtcgcttatcctatcta |
39424141 |
T |
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| Q |
101 |
ccggcagtgaagattttttcatccttctctttttaagagagggagacgacatc |
153 |
Q |
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| T |
39424140 |
c---cttggaagattttctcaaccttctctttttatgtgaggaagacgacatc |
39424091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 39463538 - 39463687
Alignment:
| Q |
1 |
catctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccggcaagtcgctaattctgtcta |
100 |
Q |
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|||||||||||||| |||||||| ||| ||||||||||||||||||||||||| ||||| || ||||||||| ||||||||||||||||| || |||| |
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| T |
39463538 |
catctctttgagagaacgcttgtcgttgcagcaagtttggttggaagaaaatagagtatgtggctgagaattgagtccggcaagtcgctaatcctatcta |
39463637 |
T |
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| Q |
101 |
ccggcagtgaagattttttcatccttctctttttaagagagggagacgacatc |
153 |
Q |
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| T |
39463638 |
c---cttggaagattttctcaaccttctctttttatgtgaggaatacgacatc |
39463687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 47369013 - 47369115
Alignment:
| Q |
1 |
catctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccggcaagtcgctaattctgtcta |
100 |
Q |
| |
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|||||||||||||| |||||||||||| |||| | ||||||||| |||| | || || ||| |||| || ||||| |||| |||||| ||||| |||| |
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| T |
47369013 |
catctctttgagagaacgcttgtggttgcagcgaatttggttgggtgaaaggagagaatatgacagagtatcgaatcaggcatgtcgctgattctatcta |
47369112 |
T |
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| Q |
101 |
ccg |
103 |
Q |
| |
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||| |
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| T |
47369113 |
ccg |
47369115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 95
Target Start/End: Complemental strand, 48445194 - 48445119
Alignment:
| Q |
20 |
ttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccggcaagtcgctaattct |
95 |
Q |
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||||||||||||||||||||||||| |||||| | || || ||| ||| ||||||||||||| |||||||||||| |
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| T |
48445194 |
ttgtggttacagcaagtttggttgggagaaaagagagaatatgactgagtattgaatccggcatgtcgctaattct |
48445119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 7176169 - 7176218
Alignment:
| Q |
1 |
catctctttgagaggacgcttgtggttacagcaagtttggttggaagaaa |
50 |
Q |
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||||||||||||||||||||||||||| |||| ||||| || |||||||| |
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| T |
7176169 |
catctctttgagaggacgcttgtggttgcagctagtttagtcggaagaaa |
7176218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 38490521 - 38490615
Alignment:
| Q |
1 |
catctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccggcaagtcgctaattct |
95 |
Q |
| |
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|||||||||||||||| ||||||| | | |||||| |||||||| |||||| | || || ||| |||| || ||||| ||||||||||||||||| |
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| T |
38490521 |
catctctttgagaggaagcttgtgatgaaagcaagattggttgggagaaaagagagaatgtgacagagtatcgaatcaggcaagtcgctaattct |
38490615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 43098446 - 43098352
Alignment:
| Q |
1 |
catctctttgagaggacgcttgtggttacagcaagtttggttggaagaaaataaagtatttgaaagagaattgaatccggcaagtcgctaattct |
95 |
Q |
| |
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||||| |||||||||||||||||| || | |||||||||||||| | ||| | || || ||| | ||||||||||| ||||| | ||||||||| |
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| T |
43098446 |
catctttttgagaggacgcttgtgattgccgcaagtttggttgggacgaaagagagaatgtgacacagaattgaatctggcaaatagctaattct |
43098352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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