View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3234_low_68 (Length: 202)
Name: NF3234_low_68
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3234_low_68 |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 2e-72; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 6850166 - 6850333
Alignment:
| Q |
18 |
attttaagtacataatgctagttttattgaaacaaagtttcatcgtctaggtgatctttttgatctgatagttttagatgaaggtcattgttgcttctat |
117 |
Q |
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| T |
6850166 |
attttaagtacataatgttagttttattgaaacaaaatttcatcgtct-ggtgatctttttgatctgatagttttagatgaaggtcattgtttcttctat |
6850264 |
T |
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| Q |
118 |
tttgatgcataatgtctattggcactttattttgatttgtaagtttcgaggatttaaattaaaatctctg |
187 |
Q |
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| T |
6850265 |
tt-gatgcataatgtctattggcactttattttgatttgtaagtttcgagaatttaaattaaaatctctg |
6850333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 6884895 - 6885004
Alignment:
| Q |
76 |
tttgatctgatagttttagatgaaggtcattgttgcttctattttgatgcataat--gtctattggcactttattttgatttgtaagtttcgaggattta |
173 |
Q |
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| T |
6884895 |
tttgatctgatagttttatgcgaaggtcattgttccttctattc-gatgcataatttgtctattggcactttattttgatttgtaagttttgaggattta |
6884993 |
T |
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| Q |
174 |
aattaaaatct |
184 |
Q |
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| T |
6884994 |
aattaaaatct |
6885004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 67 - 180
Target Start/End: Original strand, 6890654 - 6890768
Alignment:
| Q |
67 |
ggtgatctttttgatctgatagttttagatgaaggtcattgttgcttctattttgatgcataa--tgtctattggcactttattttgatttgtaagtttc |
164 |
Q |
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| T |
6890654 |
ggtgatctatttggtctgatagttttaggtgaaggtcattgttccttcta-ttggatgcataatttgtctattggcactttattctgattttgtagtttt |
6890752 |
T |
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| Q |
165 |
gaggatttaaattaaa |
180 |
Q |
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| T |
6890753 |
gaggatttaaattaaa |
6890768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 23 - 186
Target Start/End: Complemental strand, 30596399 - 30596236
Alignment:
| Q |
23 |
aagtacataatgctagttttattgaaacaaagtttcatcgtctaggtgatctttttgatctgatagttttag-atgaaggtcattgttgcttctattttg |
121 |
Q |
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| T |
30596399 |
aagtacataatgttagttttaatgaaacaaattttcatcgact-ggtgatctattagatccgatagttttagttttaaagtcattgttccttc-aattgg |
30596302 |
T |
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| Q |
122 |
atgcataa--tgtctattggcactttattttgatttgtaagtttcgaggatttaaattaaaatctct |
186 |
Q |
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| T |
30596301 |
atgcataatttgtctattggcattttattttgatttgt-agtttttaggatttgaattaaaatctct |
30596236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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