View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3234_low_7 (Length: 459)

Name: NF3234_low_7
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3234_low_7
NF3234_low_7
[»] chr2 (6 HSPs)
chr2 (271-448)||(31514600-31514781)
chr2 (19-103)||(31514922-31515006)
chr2 (192-254)||(31514771-31514833)
chr2 (48-84)||(30992453-30992489)
chr2 (52-97)||(7599062-7599107)
chr2 (48-97)||(9730263-9730312)
[»] chr8 (7 HSPs)
chr8 (52-105)||(22738716-22738769)
chr8 (46-97)||(2620122-2620173)
chr8 (52-97)||(2510587-2510632)
chr8 (52-85)||(9617433-9617466)
chr8 (52-97)||(35224164-35224209)
chr8 (52-84)||(25107331-25107363)
chr8 (52-84)||(31955636-31955668)
[»] chr5 (6 HSPs)
chr5 (52-97)||(38876750-38876795)
chr5 (52-99)||(40514891-40514938)
chr5 (52-97)||(6391397-6391442)
chr5 (52-97)||(40201782-40201827)
chr5 (52-97)||(41386882-41386927)
chr5 (52-84)||(28207268-28207300)
[»] chr4 (6 HSPs)
chr4 (52-97)||(32526506-32526551)
chr4 (52-97)||(39721995-39722040)
chr4 (52-97)||(41819221-41819266)
chr4 (52-97)||(26660247-26660292)
chr4 (52-97)||(32519853-32519898)
chr4 (53-97)||(6892962-6893006)
[»] chr3 (4 HSPs)
chr3 (52-97)||(20601716-20601761)
chr3 (52-84)||(29697622-29697654)
chr3 (19-84)||(29717498-29717564)
chr3 (52-97)||(22990632-22990677)
[»] scaffold0330 (1 HSPs)
scaffold0330 (48-86)||(10902-10940)
[»] chr1 (6 HSPs)
chr1 (59-97)||(20953138-20953176)
chr1 (52-97)||(3022725-3022770)
chr1 (52-97)||(16010554-16010599)
chr1 (52-97)||(22159907-22159952)
chr1 (52-97)||(45339200-45339245)
chr1 (53-97)||(4362323-4362367)
[»] chr7 (4 HSPs)
chr7 (52-97)||(21144448-21144493)
chr7 (48-81)||(37849308-37849341)
chr7 (52-97)||(39727363-39727408)
chr7 (53-97)||(28031927-28031971)
[»] chr6 (2 HSPs)
chr6 (61-97)||(17225182-17225218)
chr6 (59-99)||(30374736-30374776)


Alignment Details
Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 271 - 448
Target Start/End: Complemental strand, 31514781 - 31514600
Alignment:
271 tttgactttataaattcaaaaatcatggtgttcaaatttcatctggacaaacgtaaaatagccaataataacaattattaatgataacttctcc----nn 366  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
31514781 tttgactttgtaaattcaaaaatcatggtgttcaaatttcatctggacaaacgtaaaatagccaataataacaattattaatgataacttctcctttttc 31514682  T
367 nnnnnnnnnnnntaccttttgtttttaaatgtttaagactagcaacaaaattcacatacattaaggattcgttttgtgcaca 448  Q
                |  ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||    
31514681 aaagaaaaaaaattacttttgtttttaaatgtttaagactagcaacaaaattcacatacattaaagattccttttgtgcaca 31514600  T

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Target: chr2; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 31515006 - 31514922
Alignment:
19 tttcattaatttaaacttcttaatcaaatttaatttttgtatatttaaatgtattattataaactatagttgagatatggtgtaa 103  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31515006 tttcattaatttaaacttcttaatcaattttaatttttgtatatttaaatgtattattataaactatagttgagatatggtgtaa 31514922  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 192 - 254
Target Start/End: Complemental strand, 31514833 - 31514771
Alignment:
192 gataaaatgaaatgactttttggtccaagatgtgtcaacacaatgataagaatttgactttgt 254  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
31514833 gataaaatgaaatgactttttggtccaagatgtgtcaacacaatgataagaatttgactttgt 31514771  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 48 - 84
Target Start/End: Complemental strand, 30992489 - 30992453
Alignment:
48 ttaatttttgtatatttaaatgtattattataaacta 84  Q
    |||||||||| ||||||||||||||||||||||||||    
30992489 ttaatttttgcatatttaaatgtattattataaacta 30992453  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 7599107 - 7599062
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    |||||| |||||||| ||||||||||||||||||| |||| |||||    
7599107 tttttgcatatttaagtgtattattataaactataattgaaatatg 7599062  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 9730312 - 9730263
Alignment:
48 ttaatttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    |||||||||  |||||||||||||||||||||||||| | |||| |||||    
9730312 ttaatttttacatatttaaatgtattattataaactagaattgaaatatg 9730263  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 22738769 - 22738716
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatggtgtaata 105  Q
    |||||| |||||||||||||||||||||||||| | |||| ||||||| |||||    
22738769 tttttgcatatttaaatgtattattataaactagaattgaaatatggtataata 22738716  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 2620122 - 2620173
Alignment:
46 atttaatttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    ||||| |||||| |||||||||||||||||||||||||| | |||| |||||    
2620122 atttattttttgcatatttaaatgtattattataaactagaattgaaatatg 2620173  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 2510632 - 2510587
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    |||||| |||||||||||||||||||||||||| | |||| |||||    
2510632 tttttgcatatttaaatgtattattataaactagaattgaaatatg 2510587  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 9617466 - 9617433
Alignment:
52 tttttgtatatttaaatgtattattataaactat 85  Q
    |||||| |||||||||||||||||||||||||||    
9617466 tttttgcatatttaaatgtattattataaactat 9617433  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 35224209 - 35224164
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    |||||||||||||||||| |||||||||| ||||| |||| |||||    
35224209 tttttgtatatttaaatgaattattataatctataattgaaatatg 35224164  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 25107331 - 25107363
Alignment:
52 tttttgtatatttaaatgtattattataaacta 84  Q
    |||||| ||||||||||||||||||||||||||    
25107331 tttttgcatatttaaatgtattattataaacta 25107363  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 31955636 - 31955668
Alignment:
52 tttttgtatatttaaatgtattattataaacta 84  Q
    ||||||||||||||| |||||||||||||||||    
31955636 tttttgtatatttaattgtattattataaacta 31955668  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 38876795 - 38876750
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    ||||||||||||||||||||||||||||||||| | |||| |||||    
38876795 tttttgtatatttaaatgtattattataaactagaattgaaatatg 38876750  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 99
Target Start/End: Complemental strand, 40514938 - 40514891
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatggt 99  Q
    |||||| |||||||||||||||||||||||||| | |||| |||||||    
40514938 tttttgcatatttaaatgtattattataaactagaattgaaatatggt 40514891  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 6391397 - 6391442
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    ||||||||||||||||||||||| ||||||||| | |||| |||||    
6391397 tttttgtatatttaaatgtattactataaactagaattgaaatatg 6391442  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 40201782 - 40201827
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    |||||| |||||||||||||||||||||||||| | |||| |||||    
40201782 tttttgaatatttaaatgtattattataaactagaattgaaatatg 40201827  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 41386882 - 41386927
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    ||||||||||||||||| ||||||||||||||| | |||| |||||    
41386882 tttttgtatatttaaatatattattataaactagacttgaaatatg 41386927  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 28207268 - 28207300
Alignment:
52 tttttgtatatttaaatgtattattataaacta 84  Q
    ||||||||||| |||||||||||||||||||||    
28207268 tttttgtatatataaatgtattattataaacta 28207300  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 32526551 - 32526506
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    |||| |||||||||||||||||||||||||||| |||||| |||||    
32526551 ttttcgtatatttaaatgtattattataaactagagttgaaatatg 32526506  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 39721995 - 39722040
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    ||||||||||||||||||||||||||||||||| | |||| |||||    
39721995 tttttgtatatttaaatgtattattataaactagaattgaaatatg 39722040  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 41819221 - 41819266
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    ||||||||||||||||||||||||||||||||| | |||| |||||    
41819221 tttttgtatatttaaatgtattattataaactagaattgaaatatg 41819266  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 26660292 - 26660247
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    |||||| ||||||||||||||||||||||| |||| |||| |||||    
26660292 tttttgcatatttaaatgtattattataaattataattgaaatatg 26660247  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 32519898 - 32519853
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    |||||| | |||||||||||||||||||||||||| |||| |||||    
32519898 tttttgcacatttaaatgtattattataaactataattgaaatatg 32519853  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 6892962 - 6893006
Alignment:
53 ttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    ||||| |||||||||||||||||||||||||| | |||| |||||    
6892962 ttttgcatatttaaatgtattattataaactagaattgaaatatg 6893006  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 20601761 - 20601716
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    |||| |||||||||||||||||||||||||||||| |||| |||||    
20601761 ttttggtatatttaaatgtattattataaactataattgaaatatg 20601716  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 29697654 - 29697622
Alignment:
52 tttttgtatatttaaatgtattattataaacta 84  Q
    |||||||||||||||||||||||||||||||||    
29697654 tttttgtatatttaaatgtattattataaacta 29697622  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 29717498 - 29717564
Alignment:
19 tttcattaatttaaacttcttaatcaaatttaattttt-gtatatttaaatgtattattataaacta 84  Q
    |||||||||||||||||| | |||| |  || |||||| ||||||||||||||||||||| ||||||    
29717498 tttcattaatttaaacttatcaatctacattgatttttagtatatttaaatgtattattacaaacta 29717564  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 22990677 - 22990632
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    |||||| |||||||||| ||||||||||||||||| |||| |||||    
22990677 tttttgcatatttaaatatattattataaactataattgaaatatg 22990632  T

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Target: scaffold0330 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 86
Target Start/End: Original strand, 10902 - 10940
Alignment:
48 ttaatttttgtatatttaaatgtattattataaactata 86  Q
    |||||||||| |||||||||||||||||| |||||||||    
10902 ttaatttttgcatatttaaatgtattattctaaactata 10940  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 59 - 97
Target Start/End: Complemental strand, 20953176 - 20953138
Alignment:
59 atatttaaatgtattattataaactatagttgagatatg 97  Q
    |||||||||||||||||||||||||||| |||| |||||    
20953176 atatttaaatgtattattataaactataattgaaatatg 20953138  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 3022770 - 3022725
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    |||||| |||||||||||||||||||||||||| | |||| |||||    
3022770 tttttgcatatttaaatgtattattataaactagaattgaaatatg 3022725  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 16010554 - 16010599
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    |||||| ||||||| |||||||||||||||||||| |||| |||||    
16010554 tttttgcatatttatatgtattattataaactataattgaaatatg 16010599  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 22159907 - 22159952
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    |||||||||||||| ||||||||||||||| |||| |||| |||||    
22159907 tttttgtatatttatatgtattattataaattataattgaaatatg 22159952  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 45339245 - 45339200
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    |||||| |||||||||| ||||||||||||||||| |||| |||||    
45339245 tttttgcatatttaaatatattattataaactataattgaaatatg 45339200  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 4362367 - 4362323
Alignment:
53 ttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    ||||| |||||||||||||||||||||||||| | |||| |||||    
4362367 ttttgcatatttaaatgtattattataaactaaaattgaaatatg 4362323  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 21144448 - 21144493
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    ||||||||||| | ||||||||||||||||||||| |||| |||||    
21144448 tttttgtatatatgaatgtattattataaactataattgaaatatg 21144493  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 81
Target Start/End: Complemental strand, 37849341 - 37849308
Alignment:
48 ttaatttttgtatatttaaatgtattattataaa 81  Q
    |||||||| |||||||||||||||||||||||||    
37849341 ttaattttcgtatatttaaatgtattattataaa 37849308  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 39727408 - 39727363
Alignment:
52 tttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    |||||| || ||||||||||||||||||||||||| |||| |||||    
39727408 tttttgcatgtttaaatgtattattataaactataattgaaatatg 39727363  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 28031927 - 28031971
Alignment:
53 ttttgtatatttaaatgtattattataaactatagttgagatatg 97  Q
    |||| ||||||||||||||||||||||||||| | |||| |||||    
28031927 ttttttatatttaaatgtattattataaactagaattgaaatatg 28031971  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 97
Target Start/End: Complemental strand, 17225218 - 17225182
Alignment:
61 atttaaatgtattattataaactatagttgagatatg 97  Q
    |||||||||||||||||||||||||| |||| |||||    
17225218 atttaaatgtattattataaactataattgaaatatg 17225182  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 59 - 99
Target Start/End: Complemental strand, 30374776 - 30374736
Alignment:
59 atatttaaatgtattattataaactatagttgagatatggt 99  Q
    ||||||||||||| |||||||||||||| |||| |||||||    
30374776 atatttaaatgtagtattataaactataattgaaatatggt 30374736  T

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