View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3234_low_8 (Length: 456)

Name: NF3234_low_8
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3234_low_8
NF3234_low_8
[»] chr7 (6 HSPs)
chr7 (1-437)||(36988781-36989219)
chr7 (231-437)||(27528859-27529065)
chr7 (1-107)||(36994854-36994960)
chr7 (332-437)||(6924050-6924155)
chr7 (1-101)||(36999418-36999517)
chr7 (282-322)||(6923988-6924028)
[»] chr3 (2 HSPs)
chr3 (231-437)||(30831372-30831579)
chr3 (231-437)||(53115932-53116139)
[»] chr4 (1 HSPs)
chr4 (236-437)||(499194-499407)
[»] chr1 (3 HSPs)
chr1 (231-437)||(47448294-47448509)
chr1 (231-322)||(16974883-16974974)
chr1 (6-72)||(22953898-22953964)
[»] chr8 (3 HSPs)
chr8 (231-322)||(24180185-24180276)
chr8 (364-437)||(28384279-28384352)
chr8 (332-376)||(24180119-24180163)
[»] chr6 (2 HSPs)
chr6 (231-322)||(11834982-11835073)
chr6 (364-437)||(17260233-17260306)


Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 36989219 - 36988781
Alignment:
Q  1 agagtccattaaggagacagctgccaacattggtgcttcagccaaatctggcatggaaaagaccaaggccactcttcaggagaaggtaattcctttcatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36989219 agagtccattaaggagacagctgccaacattggtgcttcagccaaatctggcatggaaaagaccaaggccactcttcaggagaaggtaattcctttcatt 36989120  T
Q  101 tcctataaatattccgcaatctttttggtaaatgatagtatttttcaatttaatatttttatagattgatcaaataactctagttatttgtagatagatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36989119 tcctataaatattccgcaatctttttggtaaatgatagtatttttcaatttaatatttttatagattgatcaaataactctagttatttgtagatagatt 36989020  T
Q  201 ttttagtgacaaaactcttatattagagtgcagtaaattttcggaaaaatccgtattaaattttaattttgacggactttgtttatttccagaacatgaa 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36989019 ttttagtgacaaaactcttatattagagtgcagtaaattttcggaaaaatccgtattaaattttaattttgacggactttgtttatttccagaacatgaa 36988920  T
Q  301 caaataaaaatatatttcgaag--nnnnnnnnntcttattcaaggtaattagaactgattggaacaaccaaaccatttttaatagaaagaaatgtagctg 398  Q
    ||||||||||||||||||||||           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36988919 caaataaaaatatatttcgaagaaaaaaaaaaatcttattcaaggtaattagaactgattggaacaaccaaaccatttttaatagaaagaaatgtagctg 36988820  T
Q  399 aataaactaaatcagtaaacaagttcctcaatggtcata 437  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36988819 aataaactaaatcagtaaacaagttcctcaatggtcata 36988781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 231 - 437
Target Start/End: Original strand, 27528859 - 27529065
Alignment:
Q  231 cagtaaattttcggaaaaatccgtattaaattttaattttgacggactttgtttatttccagaacatgaacaaataaaaatatatttcgaagnnnnnnnn 330  Q
    |||||||||||||||||||||| |||  | |||||||||||||||||||| ||| |||||||||||||||||| |||||||||||| | |||            
T  27528859 cagtaaattttcggaaaaatccctatccagttttaattttgacggactttattt-tttccagaacatgaacaagtaaaaatatattccaaagaaaaaaaa 27528957  T
Q  331 n-tcttattcaaggtaattagaactgattggaacaaccaaaccatttttaatagaaagaaatgtagctgaataaactaaatcagtaaacaagttcctcaa 429  Q
      |||||||  ||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||  |||||||| ||||||||||||||||||||| |    
T  27528958 aatcttatttgaggcaattagaactgatcggaacaaccaaaccattttttatagaaagaaatgtagtggaataaacgaaatcagtaaacaagttcctcga 27529057  T
Q  430 tggtcata 437  Q
    ||||||||    
T  27529058 tggtcata 27529065  T

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Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 36994960 - 36994854
Alignment:
Q  1 agagtccattaaggagacagctgccaacattggtgcttcagccaaatctggcatggaaaagaccaaggccactcttcaggagaaggtaattcctttcatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||| |||||||||||||||||||||    
T  36994960 agagtccattaaggagacagctgccaacattggtgcttcagccaaatctggcatggaaaaaaccaaggccacatttcaagagaaggtaattcctttcatt 36994861  T
Q  101 tcctata 107  Q
    || ||||    
T  36994860 tcatata 36994854  T

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Target: chr7; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 332 - 437
Target Start/End: Original strand, 6924050 - 6924155
Alignment:
Q  332 tcttattcaaggtaattagaactgattggaacaaccaaaccatttttaatagaaagaaatgtagctgaataaactaaatcagtaaacaagttcctcaatg 431  Q
    |||||||| ||| |||||||||||||  |||||||||||||||||||||||||||||||||||   |||||||| ||||||||||||||||||||| |||    
T  6924050 tcttattcgaggcaattagaactgatcagaacaaccaaaccatttttaatagaaagaaatgtactggaataaacgaaatcagtaaacaagttcctcgatg 6924149  T
Q  432 gtcata 437  Q
    ||||||    
T  6924150 gtcata 6924155  T

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Target: chr7; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 36999517 - 36999418
Alignment:
Q  1 agagtccattaaggagacagctgccaacattggtgcttcagccaaatctggcatggaaaagaccaaggccactcttcaggagaaggtaattcctttcatt 100  Q
    |||| |||||||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||| |||||||| |||||||| |||    
T  36999517 agagaccattaaggaaacagctgccaacattggtgcttctgccaaatctggtatggagaagaccaaggccacccttcaagagaaggt-attcctttaatt 36999419  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 6923988 - 6924028
Alignment:
Q  282 tttatttccagaacatgaacaaataaaaatatatttcgaag 322  Q
    |||||||||||||||||||||| |||||||||||| |||||    
T  6923988 tttatttccagaacatgaacaagtaaaaatatattccgaag 6924028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 231 - 437
Target Start/End: Original strand, 30831372 - 30831579
Alignment:
Q  231 cagtaaattttcggaaaaatccgtattaaattttaattttgacggactttgtttatttccagaacatgaacaaataaaaatatatttcgaagnnnnnnnn 330  Q
    ||||||||||| | |||||||||||| || |||||||||| ||  ||||| |||||||||||||||||||||  |||||||||||| |||||            
T  30831372 cagtaaatttttgaaaaaatccgtatcaagttttaattttaacaaactttatttatttccagaacatgaacaggtaaaaatatattccgaagaaaaaaaa 30831471  T
Q  331 nt-cttattcaaggtaattagaactgattggaacaaccaaaccatttttaatagaaagaaatgtagctgaataaactaaatcagtaaacaagttcctcaa 429  Q
     | ||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||||| |    
T  30831472 attcttattcgaggcaattagaactgatcggaacaaccaaaccatttttaatagaaagaaatgtagtggaataaacgaaatcagtaaacaagttcctcga 30831571  T
Q  430 tggtcata 437  Q
    ||||||||    
T  30831572 tggtcata 30831579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 231 - 437
Target Start/End: Original strand, 53115932 - 53116139
Alignment:
Q  231 cagtaaattttcggaaaaatccgtattaaattttaattttgacggactttgtttatttccagaacatgaacaaataaaaatatatttcgaa-gnnnnnnn 329  Q
    ||||||||||| |||||||||||||| || ||||||||||||||| |||| ||||||||||||||||||| || |||||||||||| |||| |           
T  53115932 cagtaaatttttggaaaaatccgtatcaagttttaattttgacgggctttatttatttccagaacatgaataagtaaaaatatattccgaaggaaaaaaa 53116031  T
Q  330 nntcttattcaaggtaattagaactgattggaacaaccaaaccatttttaatagaaagaaatgtagctgaataaactaaatcagtaaacaagttcctcaa 429  Q
      |||||||| ||| |||||||||  || |||||||||||||||||||||||| ||||||||||||  |||||||| |||||||||| |||||| ||| |    
T  53116032 aatcttattcgaggcaattagaacccatcggaacaaccaaaccatttttaataaaaagaaatgtagtggaataaacaaaatcagtaaccaagtttctcga 53116131  T
Q  430 tggtcata 437  Q
    ||||||||    
T  53116132 tggtcata 53116139  T

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Target: chr4 (Bit Score: 90; Significance: 3e-43; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 236 - 437
Target Start/End: Original strand, 499194 - 499407
Alignment:
Q  236 aattttcggaaaaatccgtattaaattttaattttgacggactttgtttatttccagaacatgaacaaataaaaatatatttcgaagnnnnnnnnn---- 331  Q
    ||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||                 
T  499194 aattttcggaaaaatccgtatcaagttttaattttgacggactttatttatttccagaacatgaacaagtaaaaatatattccgaagaaaaaaaaagaaa 499293  T
Q  332 --------tcttattcaaggtaattagaactgattggaacaaccaaaccatttttaatagaaagaaatgtagctgaataaactaaatcagtaaacaagtt 423  Q
            |||||||| ||| |||||||||||||  |||||||||||||||||||||||||||||||||||   |||||||| |||||||||||||||||    
T  499294 aaaaaaattcttattcgaggcaattagaactgatcagaacaaccaaaccatttttaatagaaagaaatgtactggaataaacgaaatcagtaaacaagtt 499393  T
Q  424 cctcaatggtcata 437  Q
    |||| |||||||||    
T  499394 cctcgatggtcata 499407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 6e-38; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 231 - 437
Target Start/End: Complemental strand, 47448509 - 47448294
Alignment:
Q  231 cagtaaattttcggaaaaatccgtattaaattttaattttgacggactttgtttatttccagaacatgaacaaataaaaatatatttcgaagnnnnnnnn 330  Q
    |||| |||||| |||||||||||||| || |||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||  ||||            
T  47448509 cagtcaatttttggaaaaatccgtatcaagttttaattttgacggactttatttatttccagtacatgaacaagtaaaaatatattctgaagaaaaaaaa 47448410  T
Q  331 ntc---------ttattcaaggtaattagaactgattggaacaaccaaaccatttttaatagaaagaaatgtagctgaataaactaaatcagtaaacaag 421  Q
                |||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||| |||||||||||||||    
T  47448409 gaaaaaaaaaatttattcgaggcaattagaactgatcggaacaaccaaaccatttttaatagaaagaaatgtagtggaataaacaaaatcagtaaacaag 47448310  T
Q  422 ttcctcaatggtcata 437  Q
    |||||  |||||||||    
T  47448309 ttccttgatggtcata 47448294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 231 - 322
Target Start/End: Complemental strand, 16974974 - 16974883
Alignment:
Q  231 cagtaaattttcggaaaaatccgtattaaattttaattttgacggactttgtttatttccagaacatgaacaaataaaaatatatttcgaag 322  Q
    ||||||||||| |||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||| |||||    
T  16974974 cagtaaatttttggaaaaatccgtatcaaattttaattttgaccgactttatttatttccagaacatgaacaagtaaaaatatattccgaag 16974883  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 22953964 - 22953898
Alignment:
Q  6 ccattaaggagacagctgccaacattggtgcttcagccaaatctggcatggaaaagaccaaggccac 72  Q
    |||||||||| ||||| |||||||||||||| || ||||| |||||| |||| |||||||| |||||    
T  22953964 ccattaaggaaacagcagccaacattggtgcatctgccaagtctggcttggagaagaccaaagccac 22953898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 231 - 322
Target Start/End: Complemental strand, 24180276 - 24180185
Alignment:
Q  231 cagtaaattttcggaaaaatccgtattaaattttaattttgacggactttgtttatttccagaacatgaacaaataaaaatatatttcgaag 322  Q
    |||| |||||| |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  24180276 cagtcaatttttggaaaaatccgtatcaagttttaattttgacggactttatttatttccagaacatgaacaaataaaaatatattccgaag 24180185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 364 - 437
Target Start/End: Complemental strand, 28384352 - 28384279
Alignment:
Q  364 aaccaaaccatttttaatagaaagaaatgtagctgaataaactaaatcagtaaacaagttcctcaatggtcata 437  Q
    ||||||||||||||||||| ||||||||||||  |||||| | ||||||||||||||||| |||||||||||||    
T  28384352 aaccaaaccatttttaatacaaagaaatgtagtggaataatcgaaatcagtaaacaagtttctcaatggtcata 28384279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 376
Target Start/End: Complemental strand, 24180163 - 24180119
Alignment:
Q  332 tcttattcaaggtaattagaactgattggaacaaccaaaccattt 376  Q
    |||||||| ||  ||||||||||||| ||||||||||||||||||    
T  24180163 tcttattcgagaaaattagaactgatcggaacaaccaaaccattt 24180119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 231 - 322
Target Start/End: Original strand, 11834982 - 11835073
Alignment:
Q  231 cagtaaattttcggaaaaatccgtattaaattttaattttgacggactttgtttatttccagaacatgaacaaataaaaatatatttcgaag 322  Q
    |||| ||||||||||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| |||||    
T  11834982 cagtcaattttcggaaaaatccgtatcaagttttaattttgacggactttatttatttctagaacatgaacaagtaaaaatatattccgaag 11835073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 364 - 437
Target Start/End: Original strand, 17260233 - 17260306
Alignment:
Q  364 aaccaaaccatttttaatagaaagaaatgtagctgaataaactaaatcagtaaacaagttcctcaatggtcata 437  Q
    ||||||||||||||||||||||||||||||||  |||||||| |||| |||||||||||||||| |||||||||    
T  17260233 aaccaaaccatttttaatagaaagaaatgtagtggaataaacgaaattagtaaacaagttcctcgatggtcata 17260306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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