View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3234_low_9 (Length: 440)

Name: NF3234_low_9
Description: NF3234
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3234_low_9
NF3234_low_9
[»] chr7 (5 HSPs)
chr7 (14-230)||(9122177-9122394)
chr7 (283-418)||(9121924-9122059)
chr7 (159-273)||(5219660-5219775)
chr7 (12-105)||(18101563-18101656)
chr7 (16-113)||(30600300-30600397)
[»] chr2 (1 HSPs)
chr2 (11-388)||(12545545-12545924)
[»] chr4 (2 HSPs)
chr4 (11-388)||(13956044-13956419)
chr4 (17-200)||(2487673-2487858)
[»] chr3 (4 HSPs)
chr3 (300-420)||(7808831-7808950)
chr3 (12-120)||(7809117-7809225)
chr3 (343-381)||(29953300-29953338)
chr3 (343-381)||(30002454-30002492)
[»] chr8 (3 HSPs)
chr8 (304-413)||(30869304-30869412)
chr8 (159-260)||(30869162-30869264)
chr8 (56-149)||(14729405-14729498)
[»] chr1 (2 HSPs)
chr1 (295-423)||(12759638-12759765)
chr1 (340-420)||(22058253-22058333)
[»] chr6 (1 HSPs)
chr6 (291-387)||(8025565-8025660)
[»] chr5 (1 HSPs)
chr5 (340-420)||(18601002-18601082)


Alignment Details
Target: chr7 (Bit Score: 174; Significance: 2e-93; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 14 - 230
Target Start/End: Complemental strand, 9122394 - 9122177
Alignment:
Q  14 agatctaagattggttaatcttgtccttttcgaaaagtggtgttggaggttgatcacaagatgggaggctctgtggaaagatattattggagcgagatat 113  Q
    |||||||||||||||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9122394 agatctaagattggttaatcttgtccttttgggaaagtggcgttggaggttgatcacaagatgggaggctctgtggaaagatattattggagcgagatat 9122295  T
Q  114 gcgaaaaggtctatgtgggatcatcgcggggggagggcgataggtttaagaggtgtctc-aactggtggaaaaaggtctccttattggaaacaagccagc 212  Q
    || |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| | ||||||||||||||||| ||||    
T  9122294 gcaaaaaggtctatgtgggatcatcgcggggggagggtgataggtttaagaggtgtctcaaactggtggaaaaagatgtccttattggaaacaagtcagc 9122195  T
Q  213 ctgagtctactgattggt 230  Q
    ||||||||||| ||||||    
T  9122194 ctgagtctactaattggt 9122177  T

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Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 283 - 418
Target Start/End: Complemental strand, 9122059 - 9121924
Alignment:
Q  283 aaaaggtccctagttgggtgttattcctttgagaatttgtgtccctaggcttgttcaaagtttctatacaaaaagaagctaaagtgattgatatgactgt 382  Q
    |||||||||||||| ||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9122059 aaaaggtccctagtcgggtgctattccattgagaattcgtgaccctaggcttgttcaaagtttctatacaaaaagaagctaaagtgattgatatgactgt 9121960  T
Q  383 gagagaccaatttgaatgggtctgggatcttaagtg 418  Q
    |||||||  ||||||||||||||||||||| |||||    
T  9121959 gagagacggatttgaatgggtctgggatctgaagtg 9121924  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 159 - 273
Target Start/End: Original strand, 5219660 - 5219775
Alignment:
Q  159 ttaagaggtgtctcaa-ctggtggaaaaaggtctccttattggaaacaagccagcctgagtctactgattggttctctaacaatatcctcacgaaggtta 257  Q
    |||||||||||||||| || ||||||| || |||||||||||| | | ||  |||||||||||||| ||||||||||| | | |||||||| ||||||||    
T  5219660 ttaagaggtgtctcaaactagtggaaagagatctccttattgggatcgagttagcctgagtctactaattggttctctgaaagtatcctcaagaaggtta 5219759  T
Q  258 gagattgtcgatctac 273  Q
     ||||||| |||||||    
T  5219760 tagattgttgatctac 5219775  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 18101563 - 18101656
Alignment:
Q  12 agagatctaagattggttaatcttgtccttttcgaaaagtggtgttggaggttgatcacaagatgggaggctctgtggaaagatattattggag 105  Q
    |||||| |||||||||||||||||| ||| || |  |||||  ||||||||||  |||| ||| |||||||| |||||||||||||||||||||    
T  18101563 agagatttaagattggttaatcttgccctattagggaagtgacgttggaggtttttcacgagaggggaggctttgtggaaagatattattggag 18101656  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 30600397 - 30600300
Alignment:
Q  16 atctaagattggttaatcttgtccttttcgaaaagtggtgttggaggttgatcacaagatgggaggctctgtggaaagatattattggagcgagatat 113  Q
    ||||||||||| ||||||||  |||||| |  |||||  ||||||||||||||| || |  | ||||| ||| ||||||||||||| |||| ||||||    
T  30600397 atctaagattgcttaatctttcccttttggggaagtgacgttggaggttgatcaaaatagagaaggctttgttgaaagatattatttgagcaagatat 30600300  T

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Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 11 - 388
Target Start/End: Complemental strand, 12545924 - 12545545
Alignment:
Q  11 cagagatctaagattggttaatcttgtccttttcgaaaagtggtgttggaggttgatcacaagatgggaggctctgtggaaagatattattggagcgaga 110  Q
    |||| |||||||||| |||||||||  |||||| |  |||||| |||| || ||||||||| || || ||||| ||||  ||||||||||||||| ||||    
T  12545924 cagatatctaagattagttaatctttcccttttggggaagtggcgttgtagattgatcacaggagggaaggctttgtgtgaagatattattggagtgaga 12545825  T
Q  111 tatgcgaaaaggtctatgtgggatcatcgcggggggagggcgataggtttaagaggtgtct-caactggtggaaaaaggtctccttattggaaacaagcc 209  Q
    |||| |||| ||||||||||| |||||||  |||||  |||||| ||||||||| || |||  ||||||||||||  | ||||||||||| ||||||| |    
T  12545824 tatgtgaaagggtctatgtggaatcatcgtagggggcaggcgatgggtttaagatgtatctgaaactggtggaaagtgatctccttattgaaaacaagtc 12545725  T
Q  210 agcctgagtctactgattggttctctaacaatatcctcacgaaggttagagattgtcgatctacgannnnnnnaaaaggtccctagtt--gggtgttatt 307  Q
    | |||||| ||||||||||||| ||| | | ||| |||| ||||||||||||| |||||||||           |||| ||||| |||  | ||||||||    
T  12545724 aacctgagcctactgattggttatctgatagtatgctcaggaaggttagagatggtcgatctatagatttttggaaagatccctggtttggtgtgttatt 12545625  T
Q  308 cctttgagaatttgtgtccctaggcttgttcaaagtttctatacaaaaagaagctaaagtgattgatatgactgtgagaga 388  Q
    ||||||||||||||| |||| |   || ||| |||||| |||||||||||| |||||||||||||||||||||||||||||    
T  12545624 cctttgagaatttgtttccccaatatttttc-aagtttttatacaaaaagatgctaaagtgattgatatgactgtgagaga 12545545  T

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Target: chr4 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 11 - 388
Target Start/End: Original strand, 13956044 - 13956419
Alignment:
Q  11 cagagatctaagattggttaatcttgtccttttcgaaaagtggtgttggaggttgatcacaagatgggaggctctgtggaaagatattattggagcgaga 110  Q
    ||||||| ||||||| |||||||||  ||||||    |||||| |||||||||||||||||||| || || || | || ||| ||||||||||||| |||    
T  13956044 cagagatttaagattagttaatctttcccttttgaggaagtggcgttggaggttgatcacaagagggtagactttatgaaaatatattattggagcaaga 13956143  T
Q  111 tatgcgaaaaggtctatgtgggatcatcgcggggggagggcgataggtttaagaggtgtctcaactggtggaaaaaggtctccttattggaaacaagcca 210  Q
    |||  |||| ||  |||||| |||||||  ||||||    || | |||||||||||||||  |||||||| ||  || |||||||||||| |||| | ||    
T  13956144 tatttgaaagggcttatgtgagatcatcatggggggcacacggtgggtttaagaggtgtc-aaactggtgcaaggagatctccttattgggaacatgtca 13956242  T
Q  211 gcctgagtctactgattggttctctaacaatatcctcacgaaggttagagattgtcgatctacgannnnnnnaaaaggtccctagttgggtgttattcct 310  Q
    | || |||||| ||||||||||||| | | ||| ||||  || ||||||||| |||||||||| |       ||||| ||||| |||||| | |||||||    
T  13956243 gtctcagtctattgattggttctctgatagtatactcaaaaatgttagagatggtcgatctacaaatttactaaaagatccctggttgggagctattcct 13956342  T
Q  311 ttgagaatttgtgtccctaggcttgttcaaagtttctatacaaaaagaagctaaagtgattgatatgactgtgagaga 388  Q
    ||||||||| || |||| |||| ||||  |||||||||| || ||| ||||||| ||||||||| ||| || ||||||    
T  13956343 ttgagaattcgtttccccaggc-tgtttcaagtttctatccagaaaaaagctaatgtgattgatttgattgcgagaga 13956419  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 2487673 - 2487858
Alignment:
Q  17 tctaagattggttaatcttgtccttttcgaaaagtggtgttggaggttgatcacaagatg-ggaggctctgtggaaagatattattggagcgagatatgc 115  Q
    ||||||||||||||||||    ||||| |  |||||||| ||||||||||||| | |  | ||||||| |||||||||||||||| ||||| ||||||      
T  2487673 tctaagattggttaatctaactcttttgggcaagtggtgatggaggttgatcaaagggggaggaggctttgtggaaagatattataggagccagatatct 2487772  T
Q  116 gaaaaggtctatgtgggatcatcgcggggggagggcgataggtttaagaggtgtctc-aactggtggaaaaaggtctccttattgg 200  Q
    |||| |||||   || |||||| | |||||| |||||   | ||||||||||||||| |||||||||||  || ||||||||||||    
T  2487773 gaaagggtctcaatgtgatcattgtggggggcgggcgggggttttaagaggtgtctcaaactggtggaatgagatctccttattgg 2487858  T

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Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 300 - 420
Target Start/End: Complemental strand, 7808950 - 7808831
Alignment:
Q  300 gtgttattcctttgagaatttgtgtccctaggcttgttcaaagtttctatacaaaaagaagctaaagtgattgatatgactgtgagagaccaatttgaat 399  Q
    |||||||||||||||||||| || |||| || ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||   || ||| |    
T  7808950 gtgttattcctttgagaattcgtttcccgagcctttttcaa-gtttctatacaaaaagaagctaaagtgattgatatgactgtgagagaaagatctgatt 7808852  T
Q  400 gggtctgggatcttaagtgga 420  Q
    | |||||||||||||||||||    
T  7808851 gtgtctgggatcttaagtgga 7808831  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 12 - 120
Target Start/End: Complemental strand, 7809225 - 7809117
Alignment:
Q  12 agagatctaagattggttaatcttgtccttttcgaaaagtggtgttggaggttgatcacaagatgggaggctctgtggaaagatattattggagcgagat 111  Q
    ||||||||| ||||| ||||||||||| || | |  ||||||  |||||||||||||||| || |||||| | ||| |||||||||||||||||||||||    
T  7809225 agagatctatgattgattaatcttgtctttgtagggaagtggcattggaggttgatcacaggaggggaggttttgttgaaagatattattggagcgagat 7809126  T
Q  112 atgcgaaaa 120  Q
    |||| ||||    
T  7809125 atgcaaaaa 7809117  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 381
Target Start/End: Complemental strand, 29953338 - 29953300
Alignment:
Q  343 tttctatacaaaaagaagctaaagtgattgatatgactg 381  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  29953338 tttctatctaaaaagaagctaaagtgattgatatgactg 29953300  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 343 - 381
Target Start/End: Complemental strand, 30002492 - 30002454
Alignment:
Q  343 tttctatacaaaaagaagctaaagtgattgatatgactg 381  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  30002492 tttctatctaaaaagaagctaaagtgattgatatgactg 30002454  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 304 - 413
Target Start/End: Original strand, 30869304 - 30869412
Alignment:
Q  304 tattcctttgagaatttgtgtccctaggcttgttcaaagtttctatacaaaaagaagctaaagtgattgatatgactgtgagagaccaatttgaatgggt 403  Q
    ||||||||||||||||||| |||||||| |||||  |||| ||||| || ||||||||||||||| ||||||||||  | |||||   |||||||||| |    
T  30869304 tattcctttgagaatttgtttccctagg-ttgtttcaagtgtctattcagaaagaagctaaagtgtttgatatgaccattagagaggtatttgaatggat 30869402  T
Q  404 ctgggatctt 413  Q
     |||||||||    
T  30869403 atgggatctt 30869412  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 159 - 260
Target Start/End: Original strand, 30869162 - 30869264
Alignment:
Q  159 ttaagaggtgtctcaa-ctggtggaaaaaggtctccttattggaaacaagccagcctgagtctactgattggttctctaacaatatcctcacgaaggtta 257  Q
    ||||||| |||||||| |||||||||| || | |||||||||| | |||| || |||| || |||||||||||||||||| | |||||||| ||| ||||    
T  30869162 ttaagagatgtctcaaactggtggaaagagatatccttattgggatcaagtcaacctgggtttactgattggttctctaaaagtatcctcatgaatgtta 30869261  T
Q  258 gag 260  Q
    |||    
T  30869262 gag 30869264  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 56 - 149
Target Start/End: Complemental strand, 14729498 - 14729405
Alignment:
Q  56 ttggaggttgatcacaagatgggaggctctgtggaaagatattattggagcgagatatgcgaaaaggtctatgtgggatcatcgcggggggagg 149  Q
    |||||||||||||||| ||  | ||||| || | ||||||||||||||||| ||||||  |||| ||| |  |||||||||||| |||||||||    
T  14729498 ttggaggttgatcacacgagagtaggctttgcgaaaagatattattggagcaagatatttgaaagggttttcgtgggatcatcgtggggggagg 14729405  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 295 - 423
Target Start/End: Original strand, 12759638 - 12759765
Alignment:
Q  295 gttgggtgttattcctttgagaatttgtgtccctaggcttgttcaaagtttctatacaaaaagaagctaaagtgattgatatgactgtgagagaccaatt 394  Q
    |||||| | |||||||||||||||| || | |||| | |||||  |||||||||| || ||||||||||| || ||||||||| ||||||||||   ||     
T  12759638 gttgggagctattcctttgagaattcgttttcctatg-ttgtttcaagtttctattcagaaagaagctaatgttattgatatgtctgtgagagagggatc 12759736  T
Q  395 tgaatgggtctgggatcttaagtggaaga 423  Q
    | ||||||| || ||||||||||||||||    
T  12759737 taaatgggtatgagatcttaagtggaaga 12759765  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 340 - 420
Target Start/End: Original strand, 22058253 - 22058333
Alignment:
Q  340 aagtttctatacaaaaagaagctaaagtgattgatatgactgtgagagaccaatttgaatgggtctgggatcttaagtgga 420  Q
    |||||||||| |||||||||| ||||| ||||||||||||  |||||||   || | |||||||||  |||||||||||||    
T  22058253 aagtttctattcaaaaagaaggtaaagagattgatatgaccatgagagagagatctcaatgggtctctgatcttaagtgga 22058333  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 387
Target Start/End: Complemental strand, 8025660 - 8025565
Alignment:
Q  291 cctagttgggtgttattcctttgagaatttgtgtccctaggcttgttcaaagtttctatacaaaaagaagctaaagtgattgatatgactgtgagag 387  Q
    |||||| | |||||||||||||||| ||| || |||||||| |||||  | ||||||||  | |||||| ||||| |||||||||||| || |||||    
T  8025660 cctagtggagtgttattcctttgaggattcgtttccctagg-ttgttttaggtttctatggagaaagaacctaaaatgattgatatgattgcgagag 8025565  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 340 - 420
Target Start/End: Original strand, 18601002 - 18601082
Alignment:
Q  340 aagtttctatacaaaaagaagctaaagtgattgatatgactgtgagagaccaatttgaatgggtctgggatcttaagtgga 420  Q
    |||||||||| || ||||||||||||||| |||||||||| || | |||   || | ||| ||| ||||||||||||||||    
T  18601002 aagtttctattcagaaagaagctaaagtgtttgatatgaccgttatagagggatctaaataggtttgggatcttaagtgga 18601082  T

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