View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3235_high_13 (Length: 231)
Name: NF3235_high_13
Description: NF3235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3235_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 212
Target Start/End: Complemental strand, 35665008 - 35664807
Alignment:
| Q |
11 |
gagatgaacaatttccatttgaatccgttggtgaaggttgaaggattcacaaagtagcaagtacacaccaagaaaccaaaagagtcattatactccttct |
110 |
Q |
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| T |
35665008 |
gagatgaacaatttccatttgaatccgttggtgaaggttgaaggattcacaaagtagcaagtacacaccaagaaaccaaaagagtcattatactccttct |
35664909 |
T |
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| Q |
111 |
tacatttcttttatcactatgatttcctataaattttattctcattcgagctatcaaagcttttttatcttattttctcctaattctcattgttctaata |
210 |
Q |
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| T |
35664908 |
tacatttcttttatcactatgatttcctataaattttattctcattcgagctatcaaagtctttttatcttattttctcctaattctcattgttctaata |
35664809 |
T |
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| Q |
211 |
gc |
212 |
Q |
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|| |
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| T |
35664808 |
gc |
35664807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 18646058 - 18645997
Alignment:
| Q |
117 |
tcttttatcactatgatttcctataaattttattctcattcgagctatcaaagcttttttat |
178 |
Q |
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| T |
18646058 |
tcttttatcgatatgattccttatgaattttactctcattcgagctatcaaagctcttttat |
18645997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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