View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3235_high_5 (Length: 276)
Name: NF3235_high_5
Description: NF3235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3235_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 46 - 266
Target Start/End: Original strand, 24820289 - 24820509
Alignment:
| Q |
46 |
gtgtgggtgtctccttctataggtttcaaatttcaagctatacatatgtgagtttctgtcatatgcgtgtattctaatctcttttttaaattttgataag |
145 |
Q |
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| T |
24820289 |
gtgtgggtgtctccttctataggtttcaaatttcaagttatacatatgtgagtttctgtcatatgcgtgtattctaatctctttcttaaattttgacaag |
24820388 |
T |
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| Q |
146 |
tcggtgatttacatggtttaannnnnnnngaagtgatgcttggcaaaattgcatggtttctattgggtttaatagtttgtaagttgtgtgattgaaacta |
245 |
Q |
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| T |
24820389 |
tcggtgatttacatggtttaatattttttgaagtgatgcttggcaaaattgcatggtttctattgggtttaattgtttgtaagttgtgtgattgaaacta |
24820488 |
T |
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| Q |
246 |
tatgtgatccttttgtctctg |
266 |
Q |
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| T |
24820489 |
tatgtgatccttttgtctctg |
24820509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 259
Target Start/End: Complemental strand, 37361084 - 37361000
Alignment:
| Q |
175 |
gaagtgatgcttggcaaaattgcatggtttctattgggtttaatagtttgtaagttgtgtgattgaaactatatgtgatcctttt |
259 |
Q |
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| T |
37361084 |
gaagtgatgcttggcttaattgcaagatttctattggttttactattttgtaagttgtgtgattgaaactctatgtgatcctttt |
37361000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 18331402 - 18331314
Alignment:
| Q |
73 |
aaatttcaagctatacatatgtgagtttctgtcatatgcgtgtattctaatctcttttttaaattttgataagtcggtgatttacatgg |
161 |
Q |
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| T |
18331402 |
aaatttgaacctatacattttagagtttctgtcatatgtgtctattcttatctctttcttaaattttgataatttggtgacttacatgg |
18331314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 73 - 161
Target Start/End: Complemental strand, 38945329 - 38945241
Alignment:
| Q |
73 |
aaatttcaagctatacatatgtgagtttctgtcatatgcgtgtattctaatctcttttttaaattttgataagtcggtgatttacatgg |
161 |
Q |
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| T |
38945329 |
aaatttgaacctatacattttagagtttctgtcatatgtgtctattcttatctctttcttaaattttgataatttggtgacttacatgg |
38945241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 166
Target Start/End: Original strand, 55352450 - 55352557
Alignment:
| Q |
59 |
cttctataggtttcaaatttcaagctatacatatgtgagtttctgtcatatgcgtgtattctaatctcttttttaaattttgataagtcggtgatttaca |
158 |
Q |
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| T |
55352450 |
cttctataggttgcaaatgtgaagctatacatatgagagttgttgtcataggtgtgtattcttacctctttcttaagatttgatgatttggtaatttaca |
55352549 |
T |
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| Q |
159 |
tggtttaa |
166 |
Q |
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| T |
55352550 |
tggtttaa |
55352557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 128
Target Start/End: Complemental strand, 36405173 - 36405104
Alignment:
| Q |
59 |
cttctataggtttcaaatttcaagctatacatatgtgagtttctgtcatatgcgtgtattctaatctctt |
128 |
Q |
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| T |
36405173 |
cttctacaggttgcaaatgtgaagctatacatatgagagttgttgtcatatgcgtgtattcttatctctt |
36405104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 59 - 166
Target Start/End: Complemental strand, 18447377 - 18447270
Alignment:
| Q |
59 |
cttctataggtttcaaatttcaagctatacatatgtgagtttctgtcatatgcgtgtattctaatctcttttttaaattttgataagtcggtgatttaca |
158 |
Q |
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| T |
18447377 |
cttctacaggttgcaaatgtgaagctatacatatgagagttgttgtcaaaggtgtgtattcttatctctttcttaagatttgatgatttggtaatttaca |
18447278 |
T |
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| Q |
159 |
tggtttaa |
166 |
Q |
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|||||||| |
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| T |
18447277 |
tggtttaa |
18447270 |
T |
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