View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3235_low_1 (Length: 419)
Name: NF3235_low_1
Description: NF3235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3235_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Complemental strand, 40689794 - 40689382
Alignment:
| Q |
1 |
taagtgctttttctcttgagcaattgctaaagcttttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40689794 |
taagtgctttttctcttgagcaattgctaaagcttttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcat |
40689695 |
T |
|
| Q |
101 |
gttttgcattcataaacatagaaaccagctcttccagaatccaaagtagcagcttccatgaattttctactgctatattttgtgtagttcatcattccac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40689694 |
gttttgcattcataaacatagaaaccagctcttccagaatccaaagtagcagcttccatgaattttctactgctatattttgtgtagttcatcattccac |
40689595 |
T |
|
| Q |
201 |
catctaaatcatcggtgttctttgttgatgattcctttgcttgtccttgtgccaatagaatcaaacaatttgccatatcatattcttcatcaataacaac |
300 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40689594 |
catctaaatcatcagtgttctttgttgatgattcctttgcttgtccttgtgccaatagaatcaaacaatttgccatatcatattcttcatcaataacaac |
40689495 |
T |
|
| Q |
301 |
agtactgtcttgtttttcttcaacataagaagttgttggagatgtattattgttgttggcg------------ttattgttaacatcatcaacattgttg |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| |
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| T |
40689494 |
agtactgtcttgtttttcttcaacataagaagttgttggagatgtattattgttgttggtgttaatgatggtattattgttaacatcatcaacattgttg |
40689395 |
T |
|
| Q |
389 |
caatcttctcttt |
401 |
Q |
| |
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||||||||||||| |
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|
| T |
40689394 |
caatcttctcttt |
40689382 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 34710399 - 34710335
Alignment:
| Q |
55 |
tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat |
119 |
Q |
| |
|
||||||||| ||||| |||||| |||||| ||||||| ||||||||||||||||| |||| |||| |
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| T |
34710399 |
tctatggcctccaagtgcttgagatgaagtgaatgttttgttgcatgttttgcatgcatacacat |
34710335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 34714023 - 34713959
Alignment:
| Q |
55 |
tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat |
119 |
Q |
| |
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| T |
34714023 |
tctatggcctccaagtgcttgaaatgaagtgaaagtttttttgcatgttttgcatgcatacacat |
34713959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 87
Target Start/End: Original strand, 27509163 - 27509203
Alignment:
| Q |
47 |
tgacttgctctatggccaccaagggcttgaaatgaagggaa |
87 |
Q |
| |
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| T |
27509163 |
tgacttgctctatgtccaccaagtgcttggaatgaagggaa |
27509203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 34406576 - 34406640
Alignment:
| Q |
55 |
tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat |
119 |
Q |
| |
|
||||||||| ||||| ||||||||||||| ||| | | |||| |||||||||||| |||| |||| |
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| T |
34406576 |
tctatggcctccaagtgcttgaaatgaagtgaaagatttgttacatgttttgcatgcatacacat |
34406640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 36 - 112
Target Start/End: Original strand, 7687870 - 7687946
Alignment:
| Q |
36 |
ttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattca |
112 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||| ||| || |||||||| |||||| |
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|
| T |
7687870 |
ttggtttcttgtgacttgccctatgaccacctagggcttgaaatgaaggaaattgtctattacatgttttacattca |
7687946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 40243778 - 40243850
Alignment:
| Q |
42 |
tcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcata |
114 |
Q |
| |
|
||||||| || || ||||||||||||||||||||||| || | |||| || ||||||| |||||||||||||| |
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| T |
40243778 |
tcttgtggctagccctatggccaccaagggcttgaaaagatgagaattttttgttgcacgttttgcattcata |
40243850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 34 - 108
Target Start/End: Complemental strand, 41234787 - 41234713
Alignment:
| Q |
34 |
ttttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgca |
108 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| | |||||||| |||| |||| | |||||||||||||||| |
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|
| T |
41234787 |
ttttggtctcttgtgacttgctctatggccacctaaagcttgaaaagaagagaattctttgttgcatgttttgca |
41234713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 35506008 - 35505956
Alignment:
| Q |
35 |
tttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaa |
87 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| | |||||||||||| |||| |
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|
| T |
35506008 |
tttggtttcttgtgacttgctctatgtccacccaacgcttgaaatgaatggaa |
35505956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 127
Target Start/End: Original strand, 20926000 - 20926089
Alignment:
| Q |
38 |
ggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacatagaaacca |
127 |
Q |
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||||| ||||||||||| || || ||||| | |||||||| ||||| || |||||||| ||||||||||||||||||| ||| |||||| |
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| T |
20926000 |
ggttttttgtgacttgccctgtgaccacccaaagcttgaaaagaaggaaaagttctgttacatgttttgcattcataaatatacaaacca |
20926089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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