View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3235_low_10 (Length: 263)
Name: NF3235_low_10
Description: NF3235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3235_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 38427540 - 38427783
Alignment:
| Q |
1 |
atgtatatagtttgagatgagttgattgaaacattatgtcgtcaaagtgatctcttttgtggaaattaatttattttgaaatataaaatgttgtgtgatt |
100 |
Q |
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| T |
38427540 |
atgtatatagtttgagatgagttgattgaaacattatgtcgtcaaagtgatctcttttgtggaaattaatttattttgaaatataaaatgttgtgtgatt |
38427639 |
T |
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| Q |
101 |
gtaacttatgtgaataactaatcggtctcaaggaaggttgttattttaagaaatgcaagtccacatgtggtaataaacgtgtgatataattattcgatct |
200 |
Q |
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| T |
38427640 |
gtaacttatgtgaataactaatcggtctcaaggaaggttgttattttaagaaatgcaagtccacatgtggtaataaacgtgtgatataattattcgatct |
38427739 |
T |
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| Q |
201 |
tacaaatgaataaatgaattggtccaaaggaaaatgtattgttt |
244 |
Q |
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| T |
38427740 |
tacaaatgaataaatgaattggtccaaaggaaaatgtattgttt |
38427783 |
T |
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