View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3235_low_11 (Length: 245)
Name: NF3235_low_11
Description: NF3235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3235_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 49341264 - 49341023
Alignment:
| Q |
1 |
aagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcgtcatctttttgtggtaaatcccaaatttcact |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
49341264 |
aagcaaaacattgttttaaataagaaggtaactgatcataactt--tttgatagcagacaaaatgtcgtcatctttttgtggtaaatcccaaatttcact |
49341167 |
T |
|
| Q |
101 |
gtccctgataaacctccactcttctatatcatcttttaagagtagagaactccccaatgttcttagggccaaaggaagccctccacatttttgtacaatt |
200 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49341166 |
gtccctgttaaacttccactcttctatatcatcttttaagaatagagaactccccaatgttcttagggccaaaggaagccctccacatttttgtacaatt |
49341067 |
T |
|
| Q |
201 |
tctttcccaatctccatcaattctggatagttcttctctgctcc |
244 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |||| |
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|
| T |
49341066 |
tctttcccaatctccatcaattttggatagttcttctcttctcc |
49341023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 49352642 - 49352404
Alignment:
| Q |
1 |
aagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcgtcatctttttgtggtaaatcccaaatttcact |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| || |||||||||||||||| |||||| ||||| |
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| T |
49352642 |
aagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgagaccaggcaaaatgtcatcttctttttgtggtaaattccaaatctcact |
49352543 |
T |
|
| Q |
101 |
gtccctgataaacctccactcttctatatcatcttttaagagtagagaactccccaatgttcttagggccaaaggaagccctccacatttttgtacaatt |
200 |
Q |
| |
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||| ||||||||| |||||||||| | |||| |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49352542 |
gtctctgataaacttccactcttcaacatcaaattttaagaatagagaactccctaatgttcttagggccaaaggaagccctccacatttttgtacaatt |
49352443 |
T |
|
| Q |
201 |
tctttcccaatctccatcaattctggatagttcttctct |
239 |
Q |
| |
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|||||||||||||||| |||||||||||| || |||||| |
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| T |
49352442 |
tctttcccaatctccaccaattctggatattttttctct |
49352404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 5 - 244
Target Start/End: Original strand, 32783631 - 32783870
Alignment:
| Q |
5 |
aaaacattgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcgtcatctttttgtggtaaatcccaaatttcactgtcc |
104 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| ||||||| ||||||||||||||| |
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|
| T |
32783631 |
aaaacatcgttttaaataagaaggtaactgatcgtaacttaatttgatagcaggcaaaatgtcatcttctttttgaggtaaattccaaatttcactgtct |
32783730 |
T |
|
| Q |
105 |
ctgataaacctccactcttctatatcatcttttaagagtagagaactccccaatgttcttagggccaaaggaagccctccacatttttgtacaatttctt |
204 |
Q |
| |
|
||||||||| |||||||||| | |||| |||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32783731 |
ctgataaacttccactcttccacatcaacttttaggaatagagaactccccgatgttcttagggccaaaggaagccctccacatttttgtacaatttctt |
32783830 |
T |
|
| Q |
205 |
tcccaatctccatcaattctggatagttcttctctgctcc |
244 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||| |||| |
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|
| T |
32783831 |
tcccaatcttcatcaattctggatagtttttctcttctcc |
32783870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 146; Significance: 5e-77; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 29602262 - 29602503
Alignment:
| Q |
3 |
gcaaaacattgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcgtcatctttttgtggtaaatcccaaatttcactgt |
102 |
Q |
| |
|
||||||||| ||||||||||||| ||||| |||||| ||||||||||||||||||||||||| || || |||||||||||||||| |||||| ||| ||| |
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| T |
29602262 |
gcaaaacatcgttttaaataagatggtaattgatcaaaacttaatttgatagcaggcaaaatatcatcttctttttgtggtaaattccaaatctcattgt |
29602361 |
T |
|
| Q |
103 |
ccctgataaacctccactcttctatatcatcttttaagagtagagaactccccaatgttcttagggccaaaggaagccctccacatttttgtacaatttc |
202 |
Q |
| |
|
|||| | |||| ||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
29602362 |
ccctaacaaacttccactcttctatatcatcttttaagaacaataaactccccaatgttcttagggccaaaggaagccctccacatttttgaacaatttc |
29602461 |
T |
|
| Q |
203 |
tttcccaatctccatcaattctggatagttcttctctgctcc |
244 |
Q |
| |
|
|||||||||||| ||||||| |||||| || |||||| |||| |
|
|
| T |
29602462 |
tttcccaatctctatcaattttggatattttttctcttctcc |
29602503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 29751032 - 29750791
Alignment:
| Q |
3 |
gcaaaacattgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcgtcatctttttgtggtaaatcccaaatttcactgt |
102 |
Q |
| |
|
||||||||| |||||||||| || ||||| |||||| |||||||||||| |||||||||||| || || |||||||||||||||| |||||| ||| ||| |
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|
| T |
29751032 |
gcaaaacatcgttttaaatatgagggtaattgatcaaaacttaatttgagagcaggcaaaatatcatcttctttttgtggtaaattccaaatctcattgt |
29750933 |
T |
|
| Q |
103 |
ccctgataaacctccactcttctatatcatcttttaagagtagagaactccccaatgttcttagggccaaaggaagccctccacatttttgtacaatttc |
202 |
Q |
| |
|
|||| | |||| |||||||||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
29750932 |
ccctaacaaacttccactcttcaatatcatcttttaagaacaatgaactccccaatgttcttagggccaaaggaagccctccacatttttgaacaatttc |
29750833 |
T |
|
| Q |
203 |
tttcccaatctccatcaattctggatagttcttctctgctcc |
244 |
Q |
| |
|
|||||||||||| ||||||| |||||| || |||||| |||| |
|
|
| T |
29750832 |
tttcccaatctctatcaattttggatattttttctcttctcc |
29750791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 29743999 - 29743769
Alignment:
| Q |
3 |
gcaaaacattgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcgtcatctttttgtggtaaatcccaaatttcactgt |
102 |
Q |
| |
|
||||||||| |||| |||||||| ||||| |||||| ||||||||||||||||||||||||| || || | |||||||||||||| |||||| ||| ||| |
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|
| T |
29743999 |
gcaaaacatcgtttcaaataagacggtaattgatcaaaacttaatttgatagcaggcaaaatatcatcttttttttgtggtaaattccaaatctcattgt |
29743900 |
T |
|
| Q |
103 |
ccctgataaacctccactcttctatatcatctt----ttaagagtagagaactccccaatgttcttagggccaaaggaagccctccacatttttgtacaa |
198 |
Q |
| |
|
|||| | |||| |||||||||| |||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
29743899 |
ccctaacaaacttccactcttcaatatcatcttttaattaagaacaatgaactccccaatgttcttagggccaaaggaagccctccacatttttgcacaa |
29743800 |
T |
|
| Q |
199 |
tttctttcccaatctccatcaattctggata |
229 |
Q |
| |
|
|||||||||||||||| ||||||| |||||| |
|
|
| T |
29743799 |
tttctttcccaatctctatcaattttggata |
29743769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 35158152 - 35157936
Alignment:
| Q |
1 |
aagcaaaacattgttttaaataagaaggtaactgatcataacttaatttgatagcaggcaaaatgtcgtcatctttttgtggtaaatcccaaatttcact |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||||||||||||||| || || |||||||| || |||||||| ||||||| |||||| ||| | |
|
|
| T |
35158152 |
aagcaaaacactgttttaaataagaaggtaattgatcataacttaatttgattgctggtaaaatgtcctcgtctttttgcggtaaattccaaatctcatt |
35158053 |
T |
|
| Q |
101 |
gtccctgataaacctccactcttctatatcatcttttaagagtagagaactccccaatgttcttagggccaaaggaagccctccacatttttgtacaatt |
200 |
Q |
| |
|
|||||| | |||| ||||||||| ||||||| ||||||||| || |||||||||||||| ||||||||||| ||||||||||||||||| | ||||| |
|
|
| T |
35158052 |
gtccctaacaaacttccactcttgtatatcaacttttaagaacagcgaactccccaatgtccttagggccaatggaagccctccacatttaagcacaata |
35157953 |
T |
|
| Q |
201 |
tctttcccaatctccat |
217 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
35157952 |
tcttttccaatctccat |
35157936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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