View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3235_low_12 (Length: 239)

Name: NF3235_low_12
Description: NF3235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3235_low_12
NF3235_low_12
[»] chr7 (5 HSPs)
chr7 (157-239)||(19753333-19753415)
chr7 (175-239)||(19593863-19593927)
chr7 (58-101)||(12380277-12380320)
chr7 (157-186)||(14574255-14574284)
chr7 (157-186)||(15995418-15995447)
[»] chr2 (6 HSPs)
chr2 (37-101)||(31120284-31120348)
chr2 (157-209)||(31120174-31120226)
chr2 (189-239)||(31120121-31120171)
chr2 (58-101)||(18581962-18582005)
chr2 (58-101)||(38697806-38697849)
chr2 (58-101)||(25471643-25471686)
[»] chr6 (2 HSPs)
chr6 (45-101)||(18617079-18617135)
chr6 (186-239)||(18616754-18616807)
[»] chr4 (2 HSPs)
chr4 (58-101)||(14032803-14032846)
chr4 (53-98)||(5382956-5383001)
[»] chr5 (1 HSPs)
chr5 (58-101)||(41870415-41870458)
[»] chr3 (4 HSPs)
chr3 (58-101)||(30377918-30377961)
chr3 (58-101)||(1419206-1419249)
chr3 (58-101)||(27533356-27533399)
chr3 (157-186)||(36641637-36641666)
[»] chr1 (3 HSPs)
chr1 (58-101)||(1346110-1346153)
chr1 (58-101)||(9957629-9957672)
chr1 (58-101)||(32178164-32178207)


Alignment Details
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 19753333 - 19753415
Alignment:
Q  157 ggcaacatcttaaaataaatcaaatactcacatgtacggtgtacaatacttcaattggaaaaaggcaacaattcattaatatt 239  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  19753333 ggcaacatcttaaaatagatcaaatactcacttgtacggtgtacaatacttcgattggaaaaaggcaacaattcattaatatt 19753415  T

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Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 19593927 - 19593863
Alignment:
Q  175 atcaaatactcacatgtacggtgtacaatacttcaattggaaaaaggcaacaattcattaatatt 239  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19593927 atcaaatactcacttgtacggtgtacaatacttcaattggaaaaaggcaacaattcattaatatt 19593863  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 12380320 - 12380277
Alignment:
Q  58 caaatttatcaagagctccttgttatgattttattagctcttca 101  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  12380320 caaattaatcaagagctccttgttgtgattttattagctcttca 12380277  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 186
Target Start/End: Complemental strand, 14574284 - 14574255
Alignment:
Q  157 ggcaacatcttaaaataaatcaaatactca 186  Q
    ||||||||||||||||||||||||||||||    
T  14574284 ggcaacatcttaaaataaatcaaatactca 14574255  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 186
Target Start/End: Complemental strand, 15995447 - 15995418
Alignment:
Q  157 ggcaacatcttaaaataaatcaaatactca 186  Q
    ||||||||||||||||||||||||||||||    
T  15995447 ggcaacatcttaaaataaatcaaatactca 15995418  T

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Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 31120348 - 31120284
Alignment:
Q  37 gttggggtgccgaacctaacccaaatttatcaagagctccttgttatgattttattagctcttca 101  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31120348 gttggggtgctgaacctaacccaaatttatcaagagctccttgttatgattttattagctcttca 31120284  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 31120226 - 31120174
Alignment:
Q  157 ggcaacatcttaaaataaatcaaatactcacatgtacggtgtacaatacttca 209  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31120226 ggcaacatcttaaaataaatcaaatactcgcatgtacggtgtacaatacttca 31120174  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 31120171 - 31120121
Alignment:
Q  189 tgtacggtgtacaatacttcaattggaaaaaggcaacaattcattaatatt 239  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  31120171 tgtacggtgtacaatacttcaattggaaaaagacaacaattcattaatatt 31120121  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 18581962 - 18582005
Alignment:
Q  58 caaatttatcaagagctccttgttatgattttattagctcttca 101  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  18581962 caaatttatcaagagctccttgttgtgattttattagctcttca 18582005  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 38697849 - 38697806
Alignment:
Q  58 caaatttatcaagagctccttgttatgattttattagctcttca 101  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  38697849 caaatttatcaagagctccttgttgtgattttattagctcttca 38697806  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 25471643 - 25471686
Alignment:
Q  58 caaatttatcaagagctccttgttatgattttattagctcttca 101  Q
    |||| ||||||||||||| ||||| |||||||||||||||||||    
T  25471643 caaaattatcaagagctctttgttgtgattttattagctcttca 25471686  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 101
Target Start/End: Complemental strand, 18617135 - 18617079
Alignment:
Q  45 gccgaacctaacccaaatttatcaagagctccttgttatgattttattagctcttca 101  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  18617135 gccgaacctaacccaaatttatcaagagctcattgttgtgattttattagctcttca 18617079  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 186 - 239
Target Start/End: Complemental strand, 18616807 - 18616754
Alignment:
Q  186 acatgtacggtgtacaatacttcaattggaaaaaggcaacaattcattaatatt 239  Q
    ||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||    
T  18616807 acatgtacggtgtacaatacttcaattagaaaaagacaaaaattcattaatatt 18616754  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 14032803 - 14032846
Alignment:
Q  58 caaatttatcaagagctccttgttatgattttattagctcttca 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  14032803 caaatttatcaagagctccttgttatgattttattagctcttca 14032846  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 53 - 98
Target Start/End: Original strand, 5382956 - 5383001
Alignment:
Q  53 taacccaaatttatcaagagctccttgttatgattttattagctct 98  Q
    |||||||||||||||||||||||||| || ||||||||||||||||    
T  5382956 taacccaaatttatcaagagctccttattgtgattttattagctct 5383001  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 41870458 - 41870415
Alignment:
Q  58 caaatttatcaagagctccttgttatgattttattagctcttca 101  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  41870458 caaatttatcaagagctccttgttgtgattttattagctcttca 41870415  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 30377961 - 30377918
Alignment:
Q  58 caaatttatcaagagctccttgttatgattttattagctcttca 101  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  30377961 caaatttatcaagagctccttgttgtgattttattagctcttca 30377918  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 1419206 - 1419249
Alignment:
Q  58 caaatttatcaagagctccttgttatgattttattagctcttca 101  Q
    |||||||||||||||||||||||| | |||||||||||||||||    
T  1419206 caaatttatcaagagctccttgttgtaattttattagctcttca 1419249  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 27533356 - 27533399
Alignment:
Q  58 caaatttatcaagagctccttgttatgattttattagctcttca 101  Q
    |||||||||||||| ||||||||| |||||||||||||||||||    
T  27533356 caaatttatcaagaactccttgttgtgattttattagctcttca 27533399  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 186
Target Start/End: Complemental strand, 36641666 - 36641637
Alignment:
Q  157 ggcaacatcttaaaataaatcaaatactca 186  Q
    ||||||||||||||||||||||||||||||    
T  36641666 ggcaacatcttaaaataaatcaaatactca 36641637  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 1346110 - 1346153
Alignment:
Q  58 caaatttatcaagagctccttgttatgattttattagctcttca 101  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  1346110 caaatttatcaagagctccttgttgtgattttattagctcttca 1346153  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 101
Target Start/End: Complemental strand, 9957672 - 9957629
Alignment:
Q  58 caaatttatcaagagctccttgttatgattttattagctcttca 101  Q
    |||||||||||||||| ||||||| |||||||||||||||||||    
T  9957672 caaatttatcaagagccccttgttgtgattttattagctcttca 9957629  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 32178164 - 32178207
Alignment:
Q  58 caaatttatcaagagctccttgttatgattttattagctcttca 101  Q
    |||||||||||||||| ||||||| |||||||||||||||||||    
T  32178164 caaatttatcaagagccccttgttgtgattttattagctcttca 32178207  T

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