View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3235_low_14 (Length: 237)
Name: NF3235_low_14
Description: NF3235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3235_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 49341275 - 49341494
Alignment:
| Q |
1 |
ctttgaaaagtactttccatttactaattttgatgttagtgtgctatgggtggcacttggttttcttccaccaccaaacatgggtaaaaccttggaagat |
100 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49341275 |
ctttgaaaagtactttccatttattaattttgatgttagtgtgctatgggtggcatttggttttcttccaccaccaaacatgggtaaaaccttggaagat |
49341374 |
T |
|
| Q |
101 |
attagcattcagtttctgtacgacctgaagtctagatcatttattcaagattttgtagactttggtggtggtttttgtggatttaaattgcatgatttag |
200 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49341375 |
attagcattcagtttctgtacgaccttcagtctagatcatttattcaagattttgtagactttggtggtggtttttgtggatttaaattgcatgatttag |
49341474 |
T |
|
| Q |
201 |
tgcatgatctctcattgtat |
220 |
Q |
| |
|
|||||||||||||||||||| |
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| T |
49341475 |
tgcatgatctctcattgtat |
49341494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 49352653 - 49352872
Alignment:
| Q |
1 |
ctttgaaaagtactttccatttactaattttgatgttagtgtgctatgggtggcacttggttttcttccaccaccaaacatgggtaaaaccttggaagat |
100 |
Q |
| |
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|||||||||| ||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||| |
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| T |
49352653 |
ctttgaaaagaactttgatttttctaattttcatgttagtgtgctatgggtggcacttggttttcttccgccaccaagtaggggtaaaaccttggaagat |
49352752 |
T |
|
| Q |
101 |
attagcattcagtttctgtacgacctgaagtctagatcatttattcaagattttgtagactttggtggtggtttttgtggatttaaattgcatgatttag |
200 |
Q |
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|| | |||||||||| ||||||| || |||||||||||||| ||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
49352753 |
atgaacattcagtttgtgtacgagcttcagtctagatcatttcttcaaaattttagagactttggtggtggtttttgtggttttaaattgcatgatttgg |
49352852 |
T |
|
| Q |
201 |
tgcatgatctctcattgtat |
220 |
Q |
| |
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|||||||||| ||||||||| |
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| T |
49352853 |
tgcatgatctttcattgtat |
49352872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 40 - 220
Target Start/End: Original strand, 19030651 - 19030831
Alignment:
| Q |
40 |
tgtgctatgggtggcacttggttttcttccaccaccaaacatgggtaaaaccttggaagatattagcattcagtttctgtacgacctgaagtctagatca |
139 |
Q |
| |
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|||| |||||| |||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||| | || || ||| |||||| |
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| T |
19030651 |
tgtgttatgggaggcacttggttttcttccacaaccaaacagaggtaaaaccttggtagatattagcattcagtttctgcatgagctttggtcaagatca |
19030750 |
T |
|
| Q |
140 |
tttattcaagattttgtagactttggtggtggtttttgtggatttaaattgcatgatttagtgcatgatctctcattgtat |
220 |
Q |
| |
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|| |||||||||||| |||| |||||| || || |||| ||||| ||||||||||||||||| ||||| |||||||| |
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|
| T |
19030751 |
ttccttcaagattttgaagacattggtgatgtttgttgttactttaacttgcatgatttagtgcacgatcttgcattgtat |
19030831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 32783616 - 32783407
Alignment:
| Q |
1 |
ctttgaaaagtactttccatttactaattttgatgttagtgtgctatgggtggcacttggttttcttccaccaccaaacatgggtaaaaccttggaagat |
100 |
Q |
| |
|
|||| ||||| ||||| ||||||||||| | |||||||| |||| |||| || |||||| |||||| |||||||||| ||||||||||||||||| | |
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| T |
32783616 |
ctttcaaaaggactttacatttactaatatggatgttaggatgctttgggaggtgcttggtgttcttctgccaccaaacaggggtaaaaccttggaaggt |
32783517 |
T |
|
| Q |
101 |
attagcattcagtttctgtacgacctgaagtctagatcatttattcaagattttgtagactttggtggtggtttttgtggatttaaattgcatgatttag |
200 |
Q |
| |
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| |||||||||||| ||| | || || ||| ||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
32783516 |
actagcattcagttactgcaagagctttggtcaagatcatttcttcaagattttgtagactttggtggtggtatttgtacatttaaattgcatgatttag |
32783417 |
T |
|
| Q |
201 |
tgcatgatct |
210 |
Q |
| |
|
|||||||||| |
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|
| T |
32783416 |
tgcatgatct |
32783407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 100
Target Start/End: Complemental strand, 29602210 - 29602150
Alignment:
| Q |
40 |
tgtgctatgggtggcacttggttttcttccaccaccaaacatgggtaaaaccttggaagat |
100 |
Q |
| |
|
|||||| |||| ||| |||| |||||||||| ||||||||| ||||||||||||||||||| |
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| T |
29602210 |
tgtgctttgggaggctcttgattttcttccatcaccaaacaagggtaaaaccttggaagat |
29602150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 29751084 - 29751144
Alignment:
| Q |
40 |
tgtgctatgggtggcacttggttttcttccaccaccaaacatgggtaaaaccttggaagat |
100 |
Q |
| |
|
|||||| |||| ||| |||| |||||||||| ||||||||| ||||||||||||||||||| |
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|
| T |
29751084 |
tgtgctttgggaggctcttgattttcttccatcaccaaacaagggtaaaaccttggaagat |
29751144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 210
Target Start/End: Complemental strand, 29602079 - 29602043
Alignment:
| Q |
174 |
tttgtggatttaaattgcatgatttagtgcatgatct |
210 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |
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| T |
29602079 |
tttgtgtatttaaattgcatgatttagtgcatgatct |
29602043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 29751215 - 29751251
Alignment:
| Q |
174 |
tttgtggatttaaattgcatgatttagtgcatgatct |
210 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |
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|
| T |
29751215 |
tttgtgtatttaaattgcatgatttagtgcatgatct |
29751251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 29744183 - 29744218
Alignment:
| Q |
175 |
ttgtggatttaaattgcatgatttagtgcatgatct |
210 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |
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|
| T |
29744183 |
ttgtgcatttaaattgcatgatttagtgcatgatct |
29744218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 100
Target Start/End: Original strand, 29744051 - 29744111
Alignment:
| Q |
40 |
tgtgctatgggtggcacttggttttcttccaccaccaaacatgggtaaaaccttggaagat |
100 |
Q |
| |
|
|||||| |||| ||| |||| | |||| ||| ||||||||| ||||||||||||||||||| |
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|
| T |
29744051 |
tgtgctttgggaggctcttgatcttctcccatcaccaaacaagggtaaaaccttggaagat |
29744111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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