View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3235_low_2 (Length: 414)
Name: NF3235_low_2
Description: NF3235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3235_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 405
Target Start/End: Complemental strand, 12198584 - 12198189
Alignment:
| Q |
16 |
caatgatgaataacaaatgaactaaatggagcagtaaagatagatcgcatgctcaaaatgtttatcttttgtggtttatttaatggtacattctttatgg |
115 |
Q |
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| T |
12198584 |
caatgatgaataacaagtgaactaaatggagcagtaaagatagatcgcaagctcaaaatgtttatcttttgtggtttatttaatggtacattctttacgg |
12198485 |
T |
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| Q |
116 |
tgaagcatgtaattgacagcttcaacattcatcannnnnnnng---ggtttttggtaaggtccattctccacttgttactcatcaacgctgcgatgtaat |
212 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12198484 |
tgaagcatgtaattgacagcttcaacattcttcattttttttttttggtttttggaaaggtccattctccacttgttactcatcaatgctgcgatgtaat |
12198385 |
T |
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| Q |
213 |
tgttttgataaaatctgtaagctgatannnnnnnn---ggtgtaagctgatttcataagtcaaacttttatacaactcaattcaccattaaactaatatt |
309 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12198384 |
tgttttgataaaatctgtaagctgatttttttttttttgttgtaagctgatttcataagtcaaacttttatacaactcaattcaccattaaactaatatt |
12198285 |
T |
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| Q |
310 |
caatacaaattcatgattatttatccaagagctcttagatgagaatgagatgacacctagctacaatcttgtttggtttgatatcatgtttctctg |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
12198284 |
caatacaaattcatgattatttatccaagagctcttagataagaatgagatgacacctagctgcaatcttgtttggtttgatattgtgtttctctg |
12198189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 405
Target Start/End: Complemental strand, 12443012 - 12442617
Alignment:
| Q |
16 |
caatgatgaataacaaatgaactaaatggagcagtaaagatagatcgcatgctcaaaatgtttatcttttgtggtttatttaatggtacattctttatgg |
115 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
12443012 |
caatgatgaataacaagtgaactaaatggagcagtaaagatagatcgcaagctcaaaatgtttatcttttgtggtttatttaatggtacattctttacgg |
12442913 |
T |
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| Q |
116 |
tgaagcatgtaattgacagcttcaacattcatcannnnnnnng---ggtttttggtaaggtccattctccacttgttactcatcaacgctgcgatgtaat |
212 |
Q |
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|||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
12442912 |
tgaagcatgtaattgacagcttcaacattcttcattttttttttttggtttttggaaaggtccattctccacttgttactcatcaatgctgcgatgtaat |
12442813 |
T |
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| Q |
213 |
tgttttgataaaatctgtaagctgatannnnnnnn---ggtgtaagctgatttcataagtcaaacttttatacaactcaattcaccattaaactaatatt |
309 |
Q |
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| T |
12442812 |
tgttttgataaaatctgtaagctgatttttttttttttgttgtaagctgatttcataagtcaaacttttatacaactcaattcaccattaaactaatatt |
12442713 |
T |
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| Q |
310 |
caatacaaattcatgattatttatccaagagctcttagatgagaatgagatgacacctagctacaatcttgtttggtttgatatcatgtttctctg |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
12442712 |
caatacaaattcatgattatttatccaagagctcttagataagaatgagatgacacctagctgcaatcttgtttggtttgatattgtgtttctctg |
12442617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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