View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3235_low_3 (Length: 361)
Name: NF3235_low_3
Description: NF3235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3235_low_3 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 319; Significance: 1e-180; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 361
Target Start/End: Original strand, 22914049 - 22914399
Alignment:
| Q |
11 |
cataggctaagagatttatcaacaaaatatggacctttaatgcatctaaagcttggagaagtttctactattgtggtttcatctgcagaatatgctaaag |
110 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
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| T |
22914049 |
cataggctaagagatttatcaacaaaatatggacccttaatgcatctaaagcttggagaagtttctactattgtggtatcatcagcagaatatgctaaag |
22914148 |
T |
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| Q |
111 |
aagtgttgaaaacacatgatcttgtctttgcatcaaggcctccaatccaagcttcaaagataatgagttataattctattggtatgtcttttgcacctta |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
22914149 |
aagtgttgaaaacacatgatcttgtctttgcatcaaggcctcctatccaagcttcaaagataatgagttataattctattggtttgtctttttcacctta |
22914248 |
T |
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| Q |
211 |
tggtgattattggagacaacttaggaaaatttgtgcactagaacttttaagttcaaaacgtgttcaatcttttcaaccaattcgaagcgaagagatgact |
310 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22914249 |
tggtgattattggagacaacttagaaaaatttgtgcactagaacttttaagttcaaaacgtgttcaatcttttcaaccaattcgaagcgaagagatgact |
22914348 |
T |
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| Q |
311 |
aatctaatcgaatggatagcttcaaaggaaggatcagaaattaatctcacc |
361 |
Q |
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| T |
22914349 |
aatctaatcaaatggatagcttcaaaggaaggatcagaaattaatctcacc |
22914399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 11 - 361
Target Start/End: Complemental strand, 22934042 - 22933692
Alignment:
| Q |
11 |
cataggctaagagatttatcaacaaaatatggacctttaatgcatctaaagcttggagaagtttctactattgtggtttcatctgcagaatatgctaaag |
110 |
Q |
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| T |
22934042 |
cataggctaagagatttatcaacaaaatatggacctttaatgcatctaaagcttggagaagtttctactattgtggtatcatcagcagaatatgctaaag |
22933943 |
T |
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| Q |
111 |
aagtgttgaaaacacatgatcttgtctttgcatcaaggcctccaatccaagcttcaaagataatgagttataattctattggtatgtcttttgcacctta |
210 |
Q |
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| T |
22933942 |
aagtgttgaaaacacatgatcttgtctttgcatcaaggcctcctatccaagcttcaaagataatgagttataattctattggtttgtctttttcacctta |
22933843 |
T |
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| Q |
211 |
tggtgattattggagacaacttaggaaaatttgtgcactagaacttttaagttcaaaacgtgttcaatcttttcaaccaattcgaagcgaagagatgact |
310 |
Q |
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| T |
22933842 |
tggtgattattggagacaacttagaaaaatttgtgcactagaacttttaagttcaaaacgtgttcaatcttttcaaccaattcgagccgaagagatgact |
22933743 |
T |
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| Q |
311 |
aatctaatcgaatggatagcttcaaaggaaggatcagaaattaatctcacc |
361 |
Q |
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||||| ||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
22933742 |
aatcttatcaaatggatagcttcaaaagaaggatcagaaattaatctcacc |
22933692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 351
Target Start/End: Original strand, 22939456 - 22939796
Alignment:
| Q |
11 |
cataggctaagagatttatcaacaaaatatggacctttaatgcatctaaagcttggagaagtttctactattgtggtttcatctgcagaatatgctaaag |
110 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||| |
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| T |
22939456 |
cataggctaagagatttatcaacaaaatatggaccattaatgcatctaaagcttggagaagtttctactattgtggtttcatcagctgaatatgcaaaag |
22939555 |
T |
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| Q |
111 |
aagtgttgaaaacacatgatcttgtctttgcatcaaggcctccaatccaagcttcaaagataatgagttataattctattggtatgtcttttgcacctta |
210 |
Q |
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| T |
22939556 |
aagtgatgaaaaaccatgatcttgtctttgcatcaaggcctccaatccaagcttcaaagatcatgagttatgattctcttggtttagcttttgcacctta |
22939655 |
T |
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| Q |
211 |
tggtgattattggagacaacttaggaaaatttgtgcactagaacttttaagttcaaaacgtgttcaatcttttcaaccaattcgaagcgaagagatgact |
310 |
Q |
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|||||||||||||||| | ||||| ||||||||| |||| || || ||||||||||||||||| |||||||||||||||||| |||| |||||| | ||| |
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| T |
22939656 |
tggtgattattggagaaaccttagaaaaatttgtacacttgagctattaagttcaaaacgtgtccaatcttttcaaccaattagaagtgaagaggtaact |
22939755 |
T |
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| Q |
311 |
aatctaatcgaatggatagcttcaaaggaaggatcagaaat |
351 |
Q |
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| T |
22939756 |
aatctaatcaagtggatatcttctaaagaaggatcacaaat |
22939796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 280
Target Start/End: Complemental strand, 22947614 - 22947532
Alignment:
| Q |
198 |
cttttgcaccttatggtgattattggagacaacttaggaaaatttgtgcactagaacttttaagttcaaaacgtgttcaatct |
280 |
Q |
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| T |
22947614 |
ctttttcaccttatggtgattattggagacaacttagaaagatttgtaccgttgaacttttaagcataaaacgtgttcaatct |
22947532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 22987346 - 22987298
Alignment:
| Q |
198 |
cttttgcaccttatggtgattattggagacaacttaggaaaatttgtgc |
246 |
Q |
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||||| ||||||||||||||||||||||||||||||| || |||||||| |
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| T |
22987346 |
ctttttcaccttatggtgattattggagacaacttagaaagatttgtgc |
22987298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 276
Target Start/End: Complemental strand, 22973452 - 22973374
Alignment:
| Q |
198 |
cttttgcaccttatggtgattattggagacaacttaggaaaatttgtgcactagaacttttaagttcaaaacgtgttca |
276 |
Q |
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||||| |||| |||||||||||||||||||| ||||| || |||||| | | |||||||||||| |||||||||||| |
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| T |
22973452 |
ctttttcaccatatggtgattattggagacagcttagaaagatttgtaccgttgaacttttaagtataaaacgtgttca |
22973374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 228
Target Start/End: Complemental strand, 23018579 - 23018385
Alignment:
| Q |
34 |
aaaatatggacctttaatgcatctaaagcttggagaagtttctactattgtggtttcatctgcagaatatgctaaagaagtgttgaaaacacatgatctt |
133 |
Q |
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|||||||||||| || |||||||| | ||||||||||||||||||||||| ||||||| || || | ||| || || || ||||||| |||||| || |
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| T |
23018579 |
aaaatatggacccttgatgcatcttcaacttggagaagtttctactattgtcatttcatcagctgagtttgcaaaggaggttatgaaaacccatgatatt |
23018480 |
T |
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| Q |
134 |
gtctttgcatcaaggcctccaatccaagcttcaaagataatgagttataattctattggtatgtcttttgcaccttatggtgattattggagaca |
228 |
Q |
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| T |
23018479 |
cactttgcaacaaggcctaaagtcctagctatcgatataatgtcttacaattccacaagtatctctttttctccttatggtgattattggagaca |
23018385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 23611411 - 23611363
Alignment:
| Q |
198 |
cttttgcaccttatggtgattattggagacaacttaggaaaatttgtgc |
246 |
Q |
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||||| ||||||||||||||||||||||||||||||| || |||||||| |
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| T |
23611411 |
ctttttcaccttatggtgattattggagacaacttagaaagatttgtgc |
23611363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 14307524 - 14307476
Alignment:
| Q |
198 |
cttttgcaccttatggtgattattggagacaacttaggaaaatttgtgc |
246 |
Q |
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||||| ||||||||||||||||||||||||||||||| || |||||||| |
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| T |
14307524 |
ctttttcaccttatggtgattattggagacaacttagaaagatttgtgc |
14307476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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