View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3235_low_6 (Length: 280)

Name: NF3235_low_6
Description: NF3235
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3235_low_6
NF3235_low_6
[»] chr2 (8 HSPs)
chr2 (100-280)||(39695317-39695497)
chr2 (92-280)||(39934608-39934798)
chr2 (92-280)||(39704229-39704414)
chr2 (92-279)||(39928961-39929145)
chr2 (12-95)||(39934659-39934742)
chr2 (12-95)||(39695373-39695454)
chr2 (56-95)||(39704324-39704363)
chr2 (48-95)||(39929012-39929059)
[»] chr8 (1 HSPs)
chr8 (92-280)||(38061638-38061823)


Alignment Details
Target: chr2 (Bit Score: 173; Significance: 4e-93; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 100 - 280
Target Start/End: Complemental strand, 39695497 - 39695317
Alignment:
Q  100 tagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaactgtggaaacaaccataacacagacatggaaacattatgcacat 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39695497 tagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaactgtggaaacaaccataacacagacatggaaacattatgcacat 39695398  T
Q  200 gtactaatttgagtctctttgattcaacaaaagcagagacaaccatgccaagaacagtcaacacatgtcctactcctattc 280  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39695397 gtactaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctgctcctattc 39695317  T

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Target: chr2; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 92 - 280
Target Start/End: Original strand, 39934608 - 39934798
Alignment:
Q  92 gttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaactgtggaaacaaccataacacagacatggaaacat- 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||     
T  39934608 gttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaattgtggaaaaaaccataacacggacatggaaacatt 39934707  T
Q  191 -tatgcacatgtactaatttgagtctctttgattcaacaaaagcagagacaaccatgccaagaacagtcaacacatgtcctactcctattc 280  Q
     ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39934708 atatgcacatgtgctaatttgagtctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctgctcctattc 39934798  T

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Target: chr2; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 92 - 280
Target Start/End: Complemental strand, 39704414 - 39704229
Alignment:
Q  92 gttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaactgtggaaacaaccataacacagacatggaaacatt 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    ||       
T  39704414 gttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaattgtggaaacaaccataacacagacatttccac--- 39704318  T
Q  192 atgcacatgtactaatttgagtctctttgattcaacaaaagcagagacaaccatgccaagaacagtcaacacatgtcctactcctattc 280  Q
    |||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39704317 atgcacatgtaccaatttgagcctctttgattcaacaagagcagagacaaccatgccaagaacagtcaacacatgtcctactcctattc 39704229  T

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Target: chr2; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 92 - 279
Target Start/End: Original strand, 39928961 - 39929145
Alignment:
Q  92 gttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaactgtggaaacaaccataacacagacatggaaacatt 191  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||       
T  39928961 gttgataatagaatgtaacttgtccaggaaaatgaaacgcttctccgataccaaccaacactaattgtggaaacaaccataatacagacattgaaac--- 39929057  T
Q  192 atgcacatgtactaatttgagtctctttgattcaacaaaagcagagacaaccatgccaagaacagtcaacacatgtcctactcctatt 279  Q
    |||  ||||  |||||||||||||||| |||||||||| ||||||||| ||||||||||||||| | |||||||||||||||||||||    
T  39929058 atgttcatgcgctaatttgagtctcttcgattcaacaagagcagagaccaccatgccaagaacattgaacacatgtcctactcctatt 39929145  T

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Target: chr2; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 39934742 - 39934659
Alignment:
Q  12 gaatcaaagggactcaaattagcacatgtgcatataatgtttccatgtccgtgttatggttttttccacaattagtgttggttg 95  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39934742 gaatcaaagagactcaaattagcacatgtgcatataatgtttccatgtccgtgttatggttttttccacaattagtgttggttg 39934659  T

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Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 95
Target Start/End: Original strand, 39695373 - 39695454
Alignment:
Q  12 gaatcaaagggactcaaattagcacatgtgcatataatgtttccatgtccgtgttatggttttttccacaattagtgttggttg 95  Q
    ||||||||| |||||||||||| |||||||||||  ||||||||||||| ||||||||||| |||||||| |||||||||||||    
T  39695373 gaatcaaagagactcaaattagtacatgtgcata--atgtttccatgtctgtgttatggttgtttccacagttagtgttggttg 39695454  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 56 - 95
Target Start/End: Original strand, 39704324 - 39704363
Alignment:
Q  56 atgtccgtgttatggttttttccacaattagtgttggttg 95  Q
    ||||| ||||||||||| ||||||||||||||||||||||    
T  39704324 atgtctgtgttatggttgtttccacaattagtgttggttg 39704363  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 48 - 95
Target Start/End: Complemental strand, 39929059 - 39929012
Alignment:
Q  48 atgtttccatgtccgtgttatggttttttccacaattagtgttggttg 95  Q
    ||||||| ||||| || |||||||| ||||||||||||||||||||||    
T  39929059 atgtttcaatgtctgtattatggttgtttccacaattagtgttggttg 39929012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 92 - 280
Target Start/End: Original strand, 38061638 - 38061823
Alignment:
Q  92 gttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaataccaaccaacactaactgtggaaacaaccataacacagacatggaaacatt 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||| || ||| ||||||||||| ||||||||||||||    ||       
T  38061638 gttgataatagaatgtaacttgtccaggaaaatgaaaagcttctccaatactcaccagcattaattgtggaaacaaacataacacagacatttccac--- 38061734  T
Q  192 atgcacatgtactaatttgagtctctttgattcaacaaaagcagagacaaccatgccaagaacagtcaacacatgtcctactcctattc 280  Q
    ||| |||||| ||||||||||||| ||||  ||||||| ||| ||||||||||| || ||||  ||||||||||  |||||||||||||    
T  38061735 atgaacatgtgctaatttgagtctttttgtctcaacaagagcggagacaaccatacccagaatggtcaacacatagcctactcctattc 38061823  T

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