View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3237_high_103 (Length: 257)
Name: NF3237_high_103
Description: NF3237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3237_high_103 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 1922221 - 1921974
Alignment:
| Q |
18 |
ttataaaaatgataaaatgcgagtaaaataagttcattgattgaatgaatgtatctaaagtgaaatgtacatgtggtgtttataaacaaagttttatagc |
117 |
Q |
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| T |
1922221 |
ttataaaaatgataaaatgcgagtaaaataagttaattgattgactgaatgtatctaaagtgaaacgtacatgtggtgtttataaacaaagttttatagc |
1922122 |
T |
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| Q |
118 |
atcaaattcaaattatattgtccatcaacatgaccataaaatctaaaccttgaccatcattattcgactaaatttgtgt--------gtatagtgtaaaa |
209 |
Q |
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||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
1922121 |
atcaaattcaaattatattgtccatcaacatgaccatcaaaactaaaccttgactatcattattcgactaaatttgtgtgtatctatgtatagtgtaaaa |
1922022 |
T |
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| Q |
210 |
atgtgatagtggtcttgtgtacacgggtgtcccatattttggcatcac |
257 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
1922021 |
atgtgataggggtcttgtgtacacgggtgtcccatattttggcatcac |
1921974 |
T |
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